Basic Information
Locus ID:
Ag9G00737
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Clathrin interactor EPSIN
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 48990453 | 48999568 | - | Ag9G00737 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 95,964.23 Da | 44.60 | 46.85 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03571 | ENTH | 26 | 142 | 3.14014E-63 | - |
| Pfam | PF01417 | ENTH domain | 25 | 145 | 1.5E-45 | IPR013809 |
| SUPERFAMILY | SSF48464 | ENTH/VHS domain | 7 | 150 | 6.4E-51 | IPR008942 |
| Gene3D | G3DSA:1.25.40.90 | - | 22 | 164 | 1.9E-59 | IPR008942 |
| SMART | SM00273 | enth_2 | 24 | 150 | 3.9E-57 | IPR013809 |
| ProSiteProfiles | PS50942 | ENTH domain profile. | 18 | 150 | 42.472733 | IPR013809 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 152 | 344 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 525 | 556 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 314 | 344 | - | - |
| Coils | Coil | Coil | 139 | 163 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G43160.1 | ENTH/VHS family protein. | 0 |
| RefSeq | XP_017235292.1 | PREDICTED: clathrin interactor EPSIN 2-like isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q67YI9 | Clathrin interactor EPSIN 2 OS=Arabidopsis thaliana OX=3702 GN=EPSIN2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A162AR97 | ENTH domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_005540 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 57.160965 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 56.896442 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 43.391823 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 50.072739 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 49.558323 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 29.692541 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 33.177628 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 22.884983 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 126.642555 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 135.060486 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 139.339218 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 111.924019 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 116.496536 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 104.244057 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 102.474739 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 111.164574 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 114.645035 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 103.931557 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 86.350479 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 97.574059 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 97.759377 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 95.269623 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 103.429932 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 98.345215 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 100.514427 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 112.917824 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 112.736511 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 85.706833 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 118.95929 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 24.076984 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 24.055159 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 17.717096 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 58.941959 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 45.922318 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 77.90332 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 35.183434 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 25.951912 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 27.525118 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 75.343369 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 52.576546 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 28.40107 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 145.107712 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 128.625732 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 147.588791 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 124.831474 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 117.250885 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 124.098633 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 80.803223 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 79.431435 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 75.812958 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10980, jg5902 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15486 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah002354 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g112690 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg32236, Sbi_jg57153 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24894 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00027432 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl53545, Sgl58807 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000004184, gene:ENSEOMG00000010139 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.4AG0014650, CQ.Regalona.r1.4BG0013020 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30242950 |
| Apiaceae | Apium graveolens | 2 | Ag5G02861, Ag9G00737 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G012080 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708455, gene-LOC103719843 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2040.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G22815, Ftri12G09293, Ftri2G33971 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G43160.3, AT3G59290.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10001304m.g.v1.0, Thhalv10005771m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g25290.v2.2, Sp5g03810.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g002970.2N, BniB06g002060.2N, BniB08g028100.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1422 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1516 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g04210 |
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate03g06550, gene.Thate04g01530, gene.Thate04g12580 ... |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.107 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021421 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G08927 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3885, BH07.3680, CH07.3753 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0149730, gene-QOZ80_2BG0204500 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0627470.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_026783 |
| Poaceae | Oryza coarctata | 2 | Oco03G024750, Oco04G025280 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g56270.1 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0206090, Pt_Chr0206110 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr06G000090, Chr09G016960, Chr0G008970, Chr0G012780 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G679100 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6AG055970 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G375400.1, TraesCS6B02G413000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb191930_P002 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-55952, nbis-gene-57888, nbis-gene-8378 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g14661, Zma_g17371 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2677, evm.TU.LG08.302 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g07330 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.1453, evm.TU.Scaffold_6_RagTag.1061 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-15596, nbisL1-mrna-1761 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1552, nbisL1-mrna-953 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-2678, nbisL1-mrna-917 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.673, evm.TU.utg000019l.371 |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00001688, Maker00006903, Maker00007752 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12292, nbisL1-mrna-13625 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-12814, nbisL1-mrna-4184 |
| Salicaceae | Populus euphratica | 2 | populus_peu27040, populus_peu31015 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132604444, gene-LOC132609130 |
| Solanaceae | Solanum chilense | 1 | SOLCI005610000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007157, gene-LOC107029798 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.24536_chr08_- |
| Tamaricaceae | Tamarix chinensis | 4 | TC05G2490, TC06G0664, TC06G0665, TC06G0666 |
| Zosteraceae | Zostera marina | 2 | Zosma05g29440.v3.1, Zosma06g19330.v3.1 |