Basic Information
Locus ID:
Ag9G00706
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 37717520 | 37721403 | - | Ag9G00706 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.88 | 123,403.71 Da | 37.04 | 92.99 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 827 | 1098 | 2.02223E-92 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 51 | 94 | 6.3E-7 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 822 | 1093 | 1.2E-45 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 363 | 419 | 7.5E-7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 652 | 673 | 0.37 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 431 | 445 | 1.8 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 373 | 716 | 4.08E-54 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 805 | 1097 | 9.17E-74 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 82 | 327 | 1.53E-40 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 789 | 900 | 1.2E-31 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 901 | 1110 | 1.8E-53 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 376 | 531 | 1.2E-38 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 580 | 729 | 6.8E-33 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 187 | 375 | 3.2E-37 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 49 | 186 | 2.3E-31 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 120 | 144 | 29.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 382 | 405 | 94.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 309 | 333 | 140.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 821 | 1095 | 6.9E-38 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 406 | 429 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 430 | 453 | 190.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 166 | 193 | 160.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 454 | 478 | 22.0 | IPR003591 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 22 | 6.0 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 821 | 1100 | 38.477707 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 827 | 850 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 943 | 955 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74360.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_017254993.1 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g74360 [Daucus carota subsp. sativus] | 0 |
| C0LGJ1 | Probable LRR receptor-like serine/threonine-protein kinase At1g74360 OS=Arabidopsis thaliana OX=3702 GN=At1g74360 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161ZTG0 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021513 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.702709 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.682986 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.984712 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.27832 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.576494 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.38108 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.909676 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.522796 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.486596 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.174651 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.275857 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.351641 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.563298 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.321054 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.024701 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.420935 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 8.198915 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 6.583958 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.167978 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.023385 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.048244 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.042936 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.017747 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.084585 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.150714 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.814299 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.678686 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.529144 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.20992 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.186898 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.923228 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.388355 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.518266 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 78.447983 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 41.120419 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.571091 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.456648 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 59.355953 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.851115 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.258366 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.258216 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.345249 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg18567, jg25728 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19658 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000783 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g114100 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31053, Sbi_jg58227 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25835 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004690 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54761, Sgl60064 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000004159, gene:ENSEOMG00000022053 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0020040, CQ.Regalona.r1.5BG0021420 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30144530 |
| Apiaceae | Apium graveolens | 3 | Ag4G00384, Ag5G00586, Ag9G00706 |
| Arecaceae | Cocos nucifera | 1 | scaffold079432G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103699166, gene-LOC103710125 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1386.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri10G18978, Ftri1G04382, Ftri1G33381 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G74360.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10018042m.g.v1.0, Thhalv10019818m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g29520.v2.2, Sp6g07570.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g052850.2N, BniB04g047730.2N, BniB06g047850.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq01G1841, Ceq01G1842, Ceq01G1843 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl01G2008, Cgl01G2009, Cgl01G2010 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g21290 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG10.605, evm.TU.LG10.611 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00011927, Pov_00020588 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb0G37559 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3599, BH03.3816, CH03.4040 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_7AG0575510, gene-QOZ80_7AG0575560 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0128600.1, HORVU.MOREX.r3.7HG0729810.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_039935 |
| Poaceae | Oryza coarctata | 5 | Oco13G011760, Oco14G012530, Oco15G006200, Oco16G005980 ... |
| Poaceae | Oryza sativa | 4 | LOC_Os07g40630.1, LOC_Os08g23290.1, LOC_Os10g03420.1 ... |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_02G338700, gene-BS78_07G190600, gene-BS78_K153400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0206032, Pt_Chr0304721 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr19G002850, Chr27G014300 |
| Poaceae | Thinopyrum elongatum | 4 | Tel2E01G126800, Tel2E01G126900, Tel2E01G352500 ... |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG005720, gene_TRIDC2AG023240 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G182400.1, TraesCS2B02G208900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb134820_P001, Zm00001eb326660_P002 |
| Poaceae | Zoysia japonica | 9 | nbis-gene-32862, nbis-gene-38542, nbis-gene-53408 ... |
| Poaceae | Zoysia macrostachya | 5 | Zma_g23775, Zma_g23776, Zma_g23777, Zma_g23782, Zma_g5497 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2676, evm.TU.LG14.1811 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g17540 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.848, evm.TU.Scaffold_4_RagTag.607 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-14525, nbisL1-mrna-14526, nbisL1-mrna-28754 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-20291, nbisL1-mrna-7899 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12441, nbisL1-mrna-1746 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.387, evm.TU.utg000010l.6 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000150, Maker00008931 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14516, nbisL1-mrna-855 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1580, nbisL1-mrna-8505 |
| Salicaceae | Populus euphratica | 2 | populus_peu28498, populus_peu29924 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600496, gene-LOC132632903 |
| Solanaceae | Solanum chilense | 2 | SOLCI003353900, SOLCI005511200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107012911, gene-LOC107022828 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G1612 |