Basic Information
Locus ID:
Ag9G00670
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Oxidoreductase-like protein, N-terminal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 35494783 | 35495486 | - | Ag9G00670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 17,872.01 Da | 51.12 | 67.15 | -0.80 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17280.1 | 0 | |
| RefSeq | XP_024978148.1 | uncharacterized protein LOC112515510 [Cynara cardunculus var. scolymus] | 0 |
| Q9USH2 | UPF0651 protein P31B10.02, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCP31B10.02 PE=3 SV=1 | 0 | |
| TrEMBL | A0A103XKF0 | Oxidoreductase-like, N-terminal OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_005642 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 17.039927 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 16.261501 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 18.460388 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 17.844482 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 18.701147 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 20.021635 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 14.749011 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 19.681324 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 17.705145 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 15.545935 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 13.968353 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 17.640965 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 16.505419 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 15.721147 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 19.375904 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 13.308968 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 17.755901 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 22.398487 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 18.37842 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 26.51268 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 22.26302 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 23.311836 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 18.909107 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 25.103586 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 22.236782 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 19.985298 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 19.90538 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 13.628221 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 17.915188 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 11.599418 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 16.177547 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 11.631079 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 15.289434 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 19.250105 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 12.703302 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 15.369201 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 11.316648 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 13.018432 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 12.409223 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 20.51874 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 22.731836 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 66.285988 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 43.411156 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 19.399994 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 23.882879 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 79.703384 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 29.52059 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 38.870155 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 35.358692 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 36.705738 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31187 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8749 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027669 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g129690 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14121, Sbi_jg51872 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg10024 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00025398 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34911, Sgl49608 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000027911 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0027450, CQ.Regalona.r1.6BG0028830 |
| Apiaceae | Apium graveolens | 1 | Ag9G00670 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G000550 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G12603, Ftri1G01664 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G17280.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014934m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g26950.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g045650.2N, BniB05g022100.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g08450 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0304s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g11190 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6997 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020839 |
| Poaceae | Echinochloa crus-galli | 2 | AH03.2704, CH03.3052 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0528500, gene-QOZ80_6BG0482520 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0498540.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_006801 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g36120.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G252000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0700982 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr10G013990, Chr11G008310, Chr21G010550 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G507400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG047160, gene_TRIDC5BG051000 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G318900.1.cds1, TraesCS5B02G319400.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb319510_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-35304 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32218 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG25.929 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc06g13240, gene.Posoc08g14440 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17051 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14489 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-11735, nbisL1-mrna-21069, nbisL1-mrna-22577 ... |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000011l.528 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007438 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-23052 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3035 |
| Salicaceae | Populus euphratica | 1 | populus_peu23651 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132624826 |
| Solanaceae | Solanum chilense | 1 | SOLCI002378800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009166 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0091 |
| Zosteraceae | Zostera marina | 1 | Zosma01g31150.v3.1 |