halophFGD

Basic Information

Locus ID: Ag9G00653

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Probably inactive leucine-rich repeat receptor-like protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	33227218	33231019	-	Ag9G00653

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.50	107,456.23 Da	42.20	101.63	-0.05

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd14066	STKc_IRAK	704	969	6.70201E-91	-
Pfam	PF00069	Protein kinase domain	700	966	2.2E-40	IPR000719
Pfam	PF13516	Leucine Rich repeat	98	113	0.8	IPR001611
Pfam	PF13855	Leucine rich repeat	297	355	1.7E-7	IPR001611
Pfam	PF13855	Leucine rich repeat	369	428	2.2E-6	IPR001611
Pfam	PF13516	Leucine Rich repeat	224	238	1.3	IPR001611
Pfam	PF08263	Leucine rich repeat N-terminal domain	32	71	2.6E-10	IPR013210
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	702	972	1.66E-64	IPR011009
SUPERFAMILY	SSF52058	L domain-like	306	561	3.26E-52	-
SUPERFAMILY	SSF52058	L domain-like	46	384	4.08E-57	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	692	776	8.6E-15	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	92	456	4.8E-104	IPR032675
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	778	975	7.5E-52	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	29	91	8.0E-8	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	457	583	5.8E-31	IPR032675
SMART	SM00369	LRR_typ_2	343	367	18.0	IPR003591
SMART	SM00369	LRR_typ_2	223	246	96.0	IPR003591
SMART	SM00369	LRR_typ_2	122	146	220.0	IPR003591
SMART	SM00369	LRR_typ_2	319	342	370.0	IPR003591
SMART	SM00369	LRR_typ_2	98	121	200.0	IPR003591
SMART	SM00369	LRR_typ_2	415	439	16.0	IPR003591
SMART	SM00369	LRR_typ_2	511	535	73.0	IPR003591
ProSiteProfiles	PS50011	Protein kinase domain profile.	698	971	35.043144	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	704	729	-	IPR017441
PRINTS	PR00019	Leucine-rich repeat signature	125	138	8.5E-5	-
PRINTS	PR00019	Leucine-rich repeat signature	223	236	8.5E-5	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G28040.1	Leucine-rich receptor-like protein kinase family protein.
RefSeq	XP_017236279.1	PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Daucus carota subsp. sativus]
Swiss-Prot	Q9LRT1	Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana OX=3702 GN=At3g28040 PE=1 SV=1
TrEMBL	A0A166D378	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_005497 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.072756	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.069395	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.545655	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.485625	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.599404	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.318969	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.327015	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.226434	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	19.859171	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	21.42473	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	25.097391	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	16.016024	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	16.755053	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	12.503353	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	9.805022	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	13.636263	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	7.832613	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	32.530415	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	29.319685	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	25.638395	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	13.212271	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1.599983	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	2.491975	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	4.067788	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	7.493318	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	17.935158	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	21.53713	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	8.795519	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	17.650211	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	6.551754		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	12.221827		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	11.956256		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.75488		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	3.267014		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	1.040704		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.764519		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.547056		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.584226		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	58.708244	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	34.029354	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	22.98904	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.470106	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	3.358588	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.460433	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.570787	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.367864	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.543155	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	9.181721	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	6.043469	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	7.648529	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg10995
Aizoaceae	Mesembryanthemum crystallinum	1	gene_4763
Amaranthaceae	Atriplex hortensis	1	Ah022393
Amaranthaceae	Beta vulgaris	1	BVRB_3g064680
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg59036, Sbi_jg59037, Sbi_jg63588
Amaranthaceae	Salicornia europaea	1	Seu_jg23297
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00012858
Amaranthaceae	Suaeda glauca	2	Sgl02454, Sgl07607
Amaranthaceae	Chenopodium album	2	gene:ENSEOMG00000031161, gene:ENSEOMG00000043670
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.3AG0024490, CQ.Regalona.r1.3BG0025370
Anacardiaceae	Pistacia vera	1	pistato.v30056840
Apiaceae	Apium graveolens	1	Ag9G00653
Arecaceae	Cocos nucifera	1	scaffold000528G000010
Arecaceae	Phoenix dactylifera	1	gene-LOC103697014
Asparagaceae	Asparagus officinalis	2	AsparagusV1_02.372.V1.1, AsparagusV1_09.1081.V1.1
Asteraceae	Flaveria trinervia	3	Ftri12G20244, Ftri17G01573, Ftri17G33070
Brassicaceae	Arabidopsis thaliana	1	AT3G28040.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10003580m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp2g17040.v2.2
Brassicaceae	Brassica nigra	2	BniB02g068100.2N, BniB07g036110.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq07G0631
Casuarinaceae	Casuarina glauca	1	Cgl07G0629
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno07g12650
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate04g22810, gene.Thate09g12820, gene.Thate09g12830
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG11.81
Plantaginaceae	Plantago ovata	1	Pov_00025223
Plumbaginaceae	Limonium bicolor	3	Lb2G09863, Lb3G17691, Lb3G19084
Poaceae	Echinochloa crus-galli	3	AH02.4566, BH02.4620, CH02.4662
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_1AG0047120, gene-QOZ80_1BG0096950
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.3HG0322660.1
Poaceae	Lolium multiflorum	1	gene-QYE76_058246
Poaceae	Oryza coarctata	2	Oco01G030300, Oco02G031440
Poaceae	Oryza sativa	1	LOC_Os01g72700.1
Poaceae	Paspalum vaginatum	1	gene-BS78_03G407200
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0605432, Pt_Chr0605777
Poaceae	Sporobolus alterniflorus	5	Chr02G000770, Chr03G023660, Chr05G033860, Chr08G018170 ... Chr0G004090
Poaceae	Thinopyrum elongatum	1	Tel3E01G811600
Poaceae	Triticum dicoccoides	2	gene_TRIDC3AG070680, gene_TRIDC3BG080280
Poaceae	Triticum aestivum	2	TraesCS3A02G495400.1, TraesCS3D02G502600.1
Poaceae	Zea mays	2	Zm00001eb140560_P001, Zm00001eb362650_P001
Poaceae	Zoysia japonica	1	nbis-gene-28125
Poaceae	Zoysia macrostachya	1	Zma_g11962
Portulacaceae	Portulaca oleracea	2	evm.TU.LG13.1616, evm.TU.LG21.1054
Posidoniaceae	Posidonia oceanica	1	gene.Posoc05g02280
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_3_RagTag.1440, evm.TU.Scaffold_6_RagTag.1049
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-15609
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-20974, nbisL1-mrna-3588
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-2667, nbisL1-mrna-2668, nbisL1-mrna-903 ... nbisL1-mrna-904
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000011l.663, evm.TU.utg000019l.379
Rhizophoraceae	Kandelia obovata	2	Maker00001776, Maker00008013
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-12284, nbisL1-mrna-13636
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-24450, nbisL1-mrna-24805, nbisL1-mrna-4200
Salicaceae	Populus euphratica	2	populus_peu27075, populus_peu30995
Solanaceae	Lycium barbarum	1	gene-LOC132608939
Solanaceae	Solanum chilense	1	SOLCI001555200
Solanaceae	Solanum pennellii	1	gene-LOC107030979
Tamaricaceae	Reaumuria soongarica	1	gene_12383
Tamaricaceae	Tamarix chinensis	1	TC12G2059
Zosteraceae	Zostera marina	1	Zosma05g08370.v3.1