Basic Information
Locus ID:
Ag9G00650
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Leucine-rich repeat receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 32458698 | 32459276 | + | Ag9G00650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.77 | 21,630.58 Da | 17.49 | 95.00 | -0.04 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68400.1 | leucine-rich repeat transmembrane protein kinase family protein. | 0 |
| RefSeq | XP_017223898.1 | PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Daucus carota subsp. sativus] | 0 |
| Q9M9C5 | Probable leucine-rich repeat receptor-like protein kinase At1g68400 OS=Arabidopsis thaliana OX=3702 GN=At1g68400 PE=1 SV=1 | 0 | |
| TrEMBL | A0A175YG09 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030175 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 24.413162 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.033011 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.4092 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.765701 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.953725 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.095261 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.118634 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg10677, jg11597, jg17410, jg40005 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16699 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah027412, Ah036968 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g015710, BVRB_6g127270 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg39405, Sbi_jg52819, Sbi_jg54941 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14925 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010193, GOSA_00025927 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl14219, Sgl19365, Sgl33905, Sgl39273 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000000735, gene:ENSEOMG00000015492 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0018260, CQ.Regalona.r1.1BG0005790 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30044890, pistato.v30205810 |
| Apiaceae | Apium graveolens | 4 | Ag10G01890, Ag4G01111, Ag5G00299, Ag9G00650 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G004860, COCNU_08G004870 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709375 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.1016.V1.1, AsparagusV1_08.1805.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri18G07737, Ftri18G30776, Ftri9G31801 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT3G50230.1, AT5G43020.1, AT5G67200.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10003161m.g.v1.0, Thhalv10003753m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g07790.v2.2, Sp2g29470.v2.2, Sp5g11930.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g060560.2N, BniB04g042170.2N, BniB05g047440.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G1809, Ceq05G1344 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G1948, Cgl05G1350 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g06080 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g25660 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-1237, nbisL1-mrna-7102, nbisL1-mrna-8830 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2100, evm.TU.LG06.397 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00023883, Pov_00027520 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb3G20817, Lb4G25513, Lb7G34435, Lb7G34459 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2517, BH09.2747, CH09.2941 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0301530, gene-QOZ80_4BG0332250 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0204590.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_046700 |
| Poaceae | Oryza coarctata | 3 | Oco07G017570, Oco08G016980, Oco13G010700 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g55620.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G260200 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G002390, Chr25G001940, Chr26G016960, Chr30G001910 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G869900, Tel3E01G659200 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG072080, gene_TRIDC2BG078010 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G512500.1, TraesCS2B02G540400.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb068440_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-23029, nbis-gene-6032, nbis-gene-6033 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g20563, Zma_g22100, Zma_g22101 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG03.697, evm.TU.LG04.1040, evm.TU.LG05.1587 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g15890 |
| Rhizophoraceae | Bruguiera sexangula | 5 | evm.TU.60424.14, evm.TU.60424.15 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-17293, nbisL1-mrna-19199 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-13978, nbisL1-mrna-19241, nbisL1-mrna-8428 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-11927, nbisL1-mrna-6098, nbisL1-mrna-6613 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000002l.607, evm.TU.utg000011l.1129 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00007436, Maker00010817, Maker00012411 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-15486, nbisL1-mrna-6416, nbisL1-mrna-8265 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-10023, nbisL1-mrna-2208, nbisL1-mrna-3243 |
| Salicaceae | Populus euphratica | 2 | populus_peu14417, populus_peu23367 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132622094, gene-LOC132627831 |
| Solanaceae | Solanum chilense | 2 | SOLCI004408700, SOLCI007338400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107011236, gene-LOC107018424 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.6495_chr03_-, gene_1751 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G1769, TC04G2567 |
| Zosteraceae | Zostera marina | 4 | Zosma02g13870.v3.1, Zosma03g27340.v3.1, Zosma03g27350.v3.1 ... |