Basic Information
Locus ID:
Ag9G00646
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Stress up-regulated Nod 19
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 31983862 | 31988151 | - | Ag9G00646 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 53,607.05 Da | 36.38 | 86.31 | -0.19 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G61820.1 | 0 | |
| RefSeq | XP_017259067.1 | PREDICTED: uncharacterized protein LOC108228098 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164VZG1 | Stress up-regulated Nod 19 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021557 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 246.417709 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 288.290161 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 361.198761 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 340.602417 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 304.145081 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 626.39624 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 585.158569 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 471.773712 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 76.223015 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 73.515236 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 67.814514 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 61.064457 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 70.688576 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 69.188446 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 42.378868 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 40.403702 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 22.635063 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 31.462448 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 17.890692 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 54.39455 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 96.983551 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 15.86441 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 8.926407 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 14.825956 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 18.765991 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 27.33375 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 18.301931 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 29.594879 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 21.428684 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 29.85014 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 51.137035 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 34.360817 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 166.381805 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 170.391281 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 154.467514 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 79.93412 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 47.691742 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 62.948257 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 17.29143 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 34.33194 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 33.511086 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 160.66684 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 103.650383 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 33.690704 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 33.041836 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 211.383301 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 31.244781 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 87.018486 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 95.213326 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 143.692734 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27107 |
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_13931, gene_13932, gene_13933, gene_19751 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah001478, Ah001491, Ah030480, Ah033882 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg58400 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28278 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004853 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54937, Sgl60197 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000021660, gene:ENSEOMG00000023837 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5AG0018280 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30012740 |
| Apiaceae | Apium graveolens | 3 | Ag4G01938, Ag9G00646, Ag9G01219 |
| Arecaceae | Cocos nucifera | 1 | scaffold015211G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720742 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.1608.V1.1, AsparagusV1_10.416.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G11469, Ftri18G21659 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G61820.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10004123m.g.v1.0, Thhalv10004141m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g25020.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g002620.2N, BniB06g010190.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq05G0730, Ceq05G0731 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0739 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g13120 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g12180 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11463 |
| Nitrariaceae | Nitraria sibirica | 4 | evm.TU.LG05.537, evm.TU.LG05.538, evm.TU.LG05.539 ... |
| Plantaginaceae | Plantago ovata | 2 | Pov_00020059, Pov_00020060 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G13132, Lb5G28421 |
| Poaceae | Echinochloa crus-galli | 5 | AH08.2219, AH08.2220, BH08.2348, CH08.2524, CH08.2525 |
| Poaceae | Eleusine coracana subsp. coracana | 8 | gene-QOZ80_8AG0638300, gene-QOZ80_8AG0638390 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.5HG0501740.1, HORVU.MOREX.r3.5HG0501750.1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_030353 |
| Poaceae | Oryza coarctata | 2 | Oco15G009650, Oco16G012780 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g42590.3 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G207900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403546 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr20G002250, Chr20G002270, Chr29G001150 |
| Poaceae | Thinopyrum elongatum | 3 | Tel5E01G662000, Tel5E01G662100, Tel7E01G463200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG061050, gene_TRIDC5BG065130 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS1B02G414500.1, TraesCS5A02G421800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb037110_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-17554, nbis-gene-42740 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g23345, Zma_g24454 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.145, evm.TU.LG09.1383 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g00510 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.291 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29064 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6898 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2011 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.184 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001226 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2461 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6129 |
| Salicaceae | Populus euphratica | 5 | populus_peu28979, populus_peu28980, populus_peu28981 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603608, gene-LOC132627697 |
| Solanaceae | Solanum chilense | 2 | SOLCI002275000, SOLCI006355900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007345, gene-LOC107022446 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.17949_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1785 |