halophFGD

Basic Information

Locus ID: Ag9G00631

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Zinc ion binding

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	30961907	30976927	+	Ag9G00631

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.66	145,669.13 Da	49.44	86.22	-0.30

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd12108	Hr-like	621	767	2.97565E-18	-
CDD	cd12108	Hr-like	43	172	3.48918E-23	-
CDD	cd16464	RING-H2_Pirh2	1162	1204	2.94072E-17	-
Pfam	PF13639	Ring finger domain	1161	1203	1.1E-6	IPR001841
Pfam	PF01814	Hemerythrin HHE cation binding domain	43	174	8.1E-9	IPR012312
Pfam	PF14599	Zinc-ribbon	1209	1266	2.9E-21	IPR039512
Pfam	PF05495	CHY zinc finger	1033	1108	1.2E-16	IPR008913
SUPERFAMILY	SSF57850	RING/U-box	1160	1211	1.73E-7	-
SUPERFAMILY	SSF161245	Zinc hairpin stack	1099	1153	1.57E-14	IPR037275
SUPERFAMILY	SSF161219	CHY zinc finger-like	1024	1089	7.72E-15	IPR037274
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	1155	1206	2.5E-9	IPR013083
Gene3D	G3DSA:2.20.28.10	-	1233	1268	6.7E-15	-
Gene3D	G3DSA:1.20.120.520	nmb1532 protein domain like	40	192	1.2E-20	-
Gene3D	G3DSA:1.20.120.520	nmb1532 protein domain like	619	788	1.5E-14	-
SMART	SM00184	ring_2	1162	1203	3.1E-5	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	1162	1204	11.161508	IPR001841
ProSiteProfiles	PS51270	Zinc finger CTCHY-type profile.	1098	1161	26.036585	IPR017921
ProSiteProfiles	PS51266	Zinc finger CHY-type profile.	1026	1095	22.841242	IPR008913

Gene Ontology

Molecular Function:

GO:0008270 (zinc ion binding)

KEGG Pathway

KO Term:

K16276 (zinc finger protein-like protein)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G74770.1	zinc ion binding.
RefSeq	XP_017256586.1	PREDICTED: uncharacterized protein LOC108226153 [Daucus carota subsp. sativus]
Swiss-Prot	F4HVS0	Zinc finger protein BRUTUS-like At1g74770 OS=Arabidopsis thaliana OX=3702 GN=At1g74770 PE=2 SV=1
TrEMBL	A0A161ZTE0	Zinc finger protein BRUTUS-like At1g18910 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021543 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.038339	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.038388	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.023917	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.033504	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.397494	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.690414	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.809877	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.171806	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.374646	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.266344	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.015702	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.071857	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.080461	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.099698	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.064945	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.060405	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.041912	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.035167	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.142117	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.147967	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.071588	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.088173		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.360273		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.042721		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.02709		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.097817	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.065026	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.045109	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.20761	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.253304	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.101058	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.042424	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.200911	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.028342	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.241329	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.357673	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.488582	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg25789, jg5250, jg7271
Aizoaceae	Mesembryanthemum crystallinum	3	gene_19593, gene_19594, gene_4042
Amaranthaceae	Atriplex hortensis	2	Ah001008, Ah025684
Amaranthaceae	Beta vulgaris	2	BVRB_5g115450, BVRB_6g142570
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg12843, Sbi_jg30420, Sbi_jg53040, Sbi_jg58828
Amaranthaceae	Salicornia europaea	2	Seu_jg28696, Seu_jg8823
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00023222, GOSA_00026067
Amaranthaceae	Suaeda glauca	4	Sgl32842, Sgl38118, Sgl51113, Sgl56421
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000000764, gene:ENSEOMG00000002413 ... gene:ENSEOMG00000003960, gene:ENSEOMG00000006338, gene:ENSEOMG00000021547, gene:ENSEOMG00000025834, gene:ENSEOMG00000026160
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.5AG0021480, CQ.Regalona.r1.5BG0022870 ... CQ.Regalona.r1.6AG0014000, CQ.Regalona.r1.6BG0014780
Anacardiaceae	Pistacia vera	4	pistato.v30137940, pistato.v30146610, pistato.v30214280 ... pistato.v30214620
Apiaceae	Apium graveolens	6	Ag10G00104, Ag1G01579, Ag5G00637, Ag5G02008, Ag9G00631 ... AgUnG00789
Arecaceae	Cocos nucifera	2	COCNU_06G009100, COCNU_14G006140
Arecaceae	Phoenix dactylifera	1	gene-LOC103712784
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.3176.V1.1, AsparagusV1_01.3177.V1.1
Asteraceae	Flaveria trinervia	5	Ftri18G00746, Ftri18G05804, Ftri18G18222, Ftri8G33312 ... Ftri9G04844
Brassicaceae	Arabidopsis thaliana	3	AT1G18910.1, AT1G74770.1, AT3G18290.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10006659m.g.v1.0, Thhalv10018022m.g.v1.0 ... Thhalv10019915m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g16890.v2.2, Sp3g16420.v2.2, Sp5g29880.v2.2
Brassicaceae	Brassica nigra	5	BniB01g046240.2N, BniB03g045440.2N, BniB03g053190.2N ... BniB04g033570.2N, BniB07g052090.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq03G2435, Ceq04G1838, Ceq09G2008
Casuarinaceae	Casuarina glauca	3	Cgl03G2573, Cgl04G2016, Cgl09G2201
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno09g09200
Dunaliellaceae	Dunaliella salina	1	Dusal.0040s00008.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g36830, gene.Thate03g01240
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG03.1522, evm.TU.LG10.333, evm.TU.LG10.354 ... evm.TU.LG10.355, evm.TU.LG10.866
Plantaginaceae	Plantago ovata	3	Pov_00019080, Pov_00026940, Pov_00033249
Plumbaginaceae	Limonium bicolor	7	Lb1G01303, Lb1G01316, Lb4G22724, Lb4G22729, Lb4G22730 ... Lb4G26267, Lb4G26349
Poaceae	Echinochloa crus-galli	6	AH02.2808, AH05.1492, BH02.2894, BH05.1661, CH02.3641 ... CH05.1879
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_1AG0029140, gene-QOZ80_1BG0079360 ... gene-QOZ80_5AG0364220
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0083800.1, HORVU.MOREX.r3.3HG0281210.1
Poaceae	Lolium multiflorum	3	gene-QYE76_015618, gene-QYE76_054648, gene-QYE76_054658
Poaceae	Oryza coarctata	4	Oco01G017720, Oco02G017920, Oco09G016060, Oco10G015860
Poaceae	Oryza sativa	2	LOC_Os01g49470.1, LOC_Os05g47780.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G233900, gene-BS78_09G226300
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0503699, Pt_Chr0602417
Poaceae	Sporobolus alterniflorus	6	Chr02G012260, Chr03G013860, Chr05G021370, Chr08G014040 ... Chr18G014780, Chr22G002090
Poaceae	Thinopyrum elongatum	2	Tel1E01G612100, Tel3E01G436500
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG055130, gene_TRIDC1BG063120 ... gene_TRIDC3AG039180, gene_TRIDC3BG044320
Poaceae	Triticum aestivum	6	TraesCS1A02G374800.2, TraesCS1B02G395000.1 ... TraesCS1D02G382000.1, TraesCS3A02G262700.5, TraesCS3B02G296100.8, TraesCS3D02G262600.1
Poaceae	Zea mays	3	Zm00001eb156300_P002, Zm00001eb294920_P001 ... Zm00001eb360580_P003
Poaceae	Zoysia japonica	3	nbis-gene-12617, nbis-gene-24943, nbis-gene-26161
Poaceae	Zoysia macrostachya	3	Zma_g10916, Zma_g28738, Zma_g8459
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.2589, evm.TU.LG03.1901, evm.TU.LG13.701 ... evm.TU.LG14.1729, evm.TU.LG14.192, evm.TU.LG21.387
Posidoniaceae	Posidonia oceanica	1	gene.Posoc04g02130
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_17_RagTag.888, evm.TU.Scaffold_4_RagTag.534 ... evm.TU.Scaffold_4_RagTag.746
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-23614, nbisL1-mrna-28607, nbisL1-mrna-28832
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-11970, nbisL1-mrna-15551, nbisL1-mrna-17018
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-1625, nbisL1-mrna-1806, nbisL1-mrna-21969
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000008l.342, evm.TU.utg000008l.482 ... evm.TU.utg000013l.497
Rhizophoraceae	Kandelia obovata	3	Maker00000352, Maker00001485, Maker00004484
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-10889, nbisL1-mrna-14421, nbisL1-mrna-14563
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-1513, nbisL1-mrna-19241, nbisL1-mrna-23167
Salicaceae	Populus euphratica	4	populus_peu07093, populus_peu21056, populus_peu28547 ... populus_peu29817
Solanaceae	Lycium barbarum	3	gene-LOC132632684, gene-LOC132633263, gene-LOC132641749
Solanaceae	Solanum chilense	4	SOLCI000687200, SOLCI004899200, SOLCI004957600 ... SOLCI005652700
Solanaceae	Solanum pennellii	4	gene-LOC107015044, gene-LOC107015101, gene-LOC107020339 ... gene-LOC107022820
Tamaricaceae	Reaumuria soongarica	3	MSTRG.14018_chr08_+, gene_15957, gene_3600
Tamaricaceae	Tamarix chinensis	3	TC04G1302, TC09G1525, TC11G1082
Zosteraceae	Zostera marina	2	Zosma01g11680.v3.1, Zosma06g00740.v3.1