halophFGD

Basic Information

Locus ID: Ag9G00609

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: F-box kelch-repeat protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	28287410	28290020	-	Ag9G00609

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.12	51,525.74 Da	45.50	79.22	-0.32

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	37	74	5.5E-7	IPR001810
SUPERFAMILY	SSF81383	F-box domain	37	84	1.7E-11	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	36	74	6.3E-7	-
SMART	SM00256	fbox_2	38	77	5.8E-4	IPR001810
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	145	385	9.7E-19	IPR017451
ProSiteProfiles	PS50287	SRCR domain profile.	215	248	7.367347	IPR001190
MobiDBLite	mobidb-lite	consensus disorder prediction	1	33	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	14	33	-	-

Gene Ontology

Molecular Function:

GO:0005044 (scavenger receptor activity) GO:0005515 (protein binding)

Cellular Component:

GO:0016020 (membrane)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G04690.1	F-box and associated interaction domains-containing protein.
RefSeq	XP_017259065.1	PREDICTED: F-box protein At3g07870-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9S9V1	Putative F-box only protein 15 OS=Arabidopsis thaliana OX=3702 GN=FBX15 PE=4 SV=1
TrEMBL	A0A6L5B983	F-box domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_004719 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	37.81945	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	28.117935	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	24.350637	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	31.491278	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	30.659788	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	30.472794	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	26.717253	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	19.372784	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	54.376972	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	55.025215	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	56.936378	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	48.939537	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	48.843742	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	45.12867	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	40.763458	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	42.355652	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	24.515192	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	27.774481	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	33.03746	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	36.004635	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	23.553284	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	32.759071	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	35.574883	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	31.70233	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	32.43631	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	22.11677	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	22.402594	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	21.634306	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	24.544445	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	11.421337		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	10.345177		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	9.478172		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	29.789692		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	22.786312		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	27.245434		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	19.956388		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	15.993656		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	17.830988		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	31.908167	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	12.881312	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	8.230884	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	15.418679	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	37.866905	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	47.648857	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	39.567028	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	19.858282	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	33.449684	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	43.975632	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	31.432707	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	29.844738	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	28	Ag11G04604, Ag1G01383, Ag3G00069, Ag3G01716, Ag5G02836 ... Ag6G00270, Ag6G00271, Ag6G00272, Ag7G00151, Ag7G00152, Ag7G00420, Ag7G00421, Ag7G00422, Ag7G00423, Ag7G00424, Ag7G02451, Ag9G00609, Ag9G00610, Ag9G02156, Ag9G02524, Ag9G02573, Ag9G02632, Ag9G02633, Ag9G02645, Ag9G02649, AgUnG00927, AgUnG00928, AgUnG01362