Basic Information
Locus ID:
Ag9G00589
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
FAS-associated factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 27034948 | 27037244 | + | Ag9G00589 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 44,981.78 Da | 58.05 | 72.40 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02958 | UAS | 108 | 218 | 5.88712E-25 | - |
| CDD | cd01767 | UBX | 322 | 394 | 5.57755E-22 | - |
| Pfam | PF00789 | UBX domain | 316 | 394 | 1.1E-16 | IPR001012 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 313 | 394 | 1.16E-20 | IPR029071 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 81 | 220 | 2.21E-28 | IPR036249 |
| Gene3D | G3DSA:3.10.20.90 | - | 318 | 395 | 1.7E-20 | - |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 83 | 222 | 5.1E-37 | - |
| SMART | SM00166 | ubx_3 | 311 | 395 | 1.7E-6 | IPR001012 |
| SMART | SM00594 | 45neu3 | 87 | 213 | 5.0E-30 | IPR006577 |
| ProSiteProfiles | PS50033 | UBX domain profile. | 315 | 393 | 17.533632 | IPR001012 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 292 | - | - |
| Coils | Coil | Coil | 227 | 247 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10790.1 | UBX domain-containing protein. | 0 |
| RefSeq | XP_017258498.1 | PREDICTED: plant UBX domain-containing protein 10-like [Daucus carota subsp. sativus] | 0 |
| Q9M0N1 | Plant UBX domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=PUX10 PE=2 SV=1 | 0 | |
| TrEMBL | A0A161ZTC2 | UBX domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021573 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 5.442008 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.257839 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.468725 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.811264 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.551257 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.39938 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.252791 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.139501 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 21.941126 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 20.492331 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 21.071274 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 17.046661 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 15.513971 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 15.956136 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.60784 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.10903 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.042668 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.323699 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3.629606 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 4.288735 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.769255 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 26.670832 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 29.749655 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 30.123396 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 16.739517 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 9.2242 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 7.784544 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 8.407711 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 10.200176 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.180029 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.717335 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.616884 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.550264 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.44212 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.370408 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.14598 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.052406 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.213166 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 7.391098 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.684588 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.612736 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.323855 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.999938 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 2.1682 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 3.607933 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.376042 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 4.446693 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 21.795399 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 26.275412 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 22.232132 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg18771, jg25898 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19498 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000570 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g117580 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30574, Sbi_jg58678 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28544 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014917 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55203, Sgl60451 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008172, gene:ENSEOMG00000022399 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0023270, CQ.Regalona.r1.5BG0024750 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30139580 |
| Apiaceae | Apium graveolens | 1 | Ag9G00589 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G006590 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103722376 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.490.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G26174 |
| Brassicaceae | Brassica nigra | 1 | BniB04g047330.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1971 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2158 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g05110 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0115s00010.v1.0 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.705 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G26684 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.2359, BH03.2483, CH03.2677 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0539220, gene-QOZ80_6BG0492540 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0489890.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_006114 |
| Poaceae | Oryza coarctata | 2 | Oco17G007600, Oco18G007880 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g30411.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G220700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0701625 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr10G007610 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G413100 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G258700.1, TraesCS5B02G257600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb316320_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19525 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32762 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG01.2455, evm.TU.LG02.965, evm.TU.LG09.997 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g09690 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.1046 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14724 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5026 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12608 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000010l.130 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008466 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-728 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8683 |
| Salicaceae | Populus euphratica | 1 | populus_peu28677 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632625 |
| Solanaceae | Solanum chilense | 1 | SOLCI001700500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012385 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15342 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0974 |