Basic Information
Locus ID:
Ag9G00575
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
L-type lectin-domain containing receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 26456650 | 26458930 | + | Ag9G00575 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.92 | 73,059.77 Da | 34.59 | 86.70 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 20 | 257 | 3.30636E-77 | IPR001220 |
| CDD | cd14066 | STKc_IRAK | 350 | 614 | 1.61057E-97 | - |
| Pfam | PF00069 | Protein kinase domain | 346 | 611 | 1.2E-49 | IPR000719 |
| Pfam | PF00139 | Legume lectin domain | 20 | 266 | 3.1E-63 | IPR001220 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 18 | 269 | 3.12E-55 | IPR013320 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 325 | 622 | 1.01E-77 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 312 | 419 | 6.2E-32 | - |
| Gene3D | G3DSA:2.60.120.200 | - | 18 | 266 | 3.0E-58 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 420 | 624 | 2.7E-58 | - |
| SMART | SM00220 | serkin_6 | 344 | 614 | 2.2E-38 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 344 | 627 | 37.799274 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 350 | 372 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 464 | 476 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 625 | 654 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 636 | 654 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15530.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_017254770.1 | PREDICTED: L-type lectin-domain containing receptor kinase S.1 [Daucus carota subsp. sativus] | 0 |
| Q9M9E0 | L-type lectin-domain containing receptor kinase S.1 OS=Arabidopsis thaliana OX=3702 GN=LECRKS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8S0R2N6 | L-type lectin-domain containing receptor kinase OS=Olea europaea subsp. europaea OX=158383 GN=OLEA9_A098205 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 18.748175 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 21.982584 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 21.43269 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 18.813852 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 20.474352 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 16.164755 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 24.457478 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 42.40554 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 1.510196 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 1.483421 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 1.482409 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 1.97076 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 1.868685 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 1.5821 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.610543 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.818528 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.313408 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.568799 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.502908 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 3.854167 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.324828 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.497568 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 4.685751 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.594735 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.96698 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 1.325268 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.973732 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.860003 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 2.03475 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.482693 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.681377 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.433584 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.58755 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.817381 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.341235 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.207952 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.907607 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.528505 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.659344 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.927396 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.6676 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 8.178452 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 7.97948 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.704894 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.603699 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 5.394846 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.187826 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 1.321324 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 1.057139 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.799498 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18789 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30139870 |
| Apiaceae | Apium graveolens | 1 | Ag9G00575 |
| Arecaceae | Cocos nucifera | 1 | scaffold139380G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103696642 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G33985 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G15530.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007025m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g13890.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g026320.2N, BniB05g024760.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1903 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2071 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g03250 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g09400 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.674 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00022174 |
| Posidoniaceae | Posidonia oceanica | 11 | gene.Posoc01g06860, gene.Posoc01g06890, gene.Posoc01g17230 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.1070 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14748 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5039 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12628 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000010l.54 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008707 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17036 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8706 |
| Salicaceae | Populus euphratica | 3 | populus_peu28705, populus_peu30130, populus_peu30131 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632599 |
| Solanaceae | Solanum chilense | 1 | SOLCI005418400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014547 |