Basic Information
Locus ID:
Ag9G00541
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 24560163 | 24565139 | + | Ag9G00541 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.79 | 11,735.27 Da | 70.07 | 78.67 | -0.92 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017255761.1 | PREDICTED: uncharacterized protein LOC108225414 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A2R6PDM4 | RING finger protein (Fragment) OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc29655 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.852585 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.243068 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.252618 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.164684 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.251415 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.885419 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.205159 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.897201 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 9.036769 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 8.240966 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 8.141413 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 7.016316 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 7.838977 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 7.632194 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.454309 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.325503 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.752512 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 3.414508 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.768906 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.521801 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 3.610873 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.585584 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 4.527166 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 7.18004 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.234943 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 3.339307 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.557858 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.851619 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 5.400177 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.507612 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.162744 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.864147 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.735531 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.998445 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.125125 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.35198 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.813228 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.610196 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.740602 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.136385 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.077101 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.822059 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.228452 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.094894 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.90269 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.296944 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 12.173781 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 12.562924 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 12.438161 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg25762 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19832 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001817 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg31930, Sbi_jg57574, Sbi_jg57577 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25257 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00025111 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl54180, Sgl59487, Sgl59522 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004772, gene:ENSEOMG00000021711 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0016780, CQ.Regalona.r1.5BG0018080 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30028280 |
| Apiaceae | Apium graveolens | 1 | Ag9G00541 |
| Arecaceae | Cocos nucifera | 2 | COCNU_11G003160, COCNU_11G003170 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103707865, gene-LOC120104671, gene-LOC120111431 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1455.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G20988 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G50410.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014456m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp6g12560.v2.2, SpUn0015_0080.v2.2, SpUn0039_0020.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g060720.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G2048 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G2227, Cgl01G2248 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g03970 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1078 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028946 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G27261 |
| Poaceae | Echinochloa crus-galli | 2 | BH08.2297, CH08.2474 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0638950, gene-QOZ80_8BG0666890 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0683950.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_030257 |
| Poaceae | Oryza coarctata | 2 | Oco15G010050, Oco16G012430 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g41900.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G202300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0306494, Pt_Chr0405814 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr16G017780, Chr17G017080, Chr20G001220, Chr29G001550 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G457300 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7BG024980 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G260200.1, TraesCS7B02G158200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb175120_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-17511 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24427 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.2269, evm.TU.LG07.2157 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g12510 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.360 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29011 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-88 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1951 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.230 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000836 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14681 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1360 |
| Salicaceae | Populus euphratica | 2 | populus_peu28850, populus_peu30256 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632618 |
| Solanaceae | Solanum chilense | 1 | SOLCI007106100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012157 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10371 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2625 |