halophFGD

Basic Information

Locus ID: Ag9G00532

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: MADS

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	24094169	24096410	-	Ag9G00532

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.13	17,311.53 Da	65.42	80.07	-0.99

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01486	K-box region	23	109	1.9E-25	IPR002487
ProSiteProfiles	PS51297	K-box domain profile.	25	117	14.307983	IPR002487
Coils	Coil	Coil	62	82	-	-
Coils	Coil	Coil	88	115	-	-
Coils	Coil	Coil	25	52	-	-

Gene Ontology

Biological Process:

GO:0006355 (regulation of DNA-templated transcription)

Molecular Function:

GO:0003700 (DNA-binding transcription factor activity)

Cellular Component:

GO:0005634 (nucleus)

KEGG Pathway

KO Term:

K09264 (MADS-box transcription factor, plant)

Best hit

Source	Best Hit ID	Description
RefSeq	XP_017257105.1	PREDICTED: MADS-box transcription factor 6-like isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q6EU39	MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS6 PE=1 SV=1
TrEMBL	A0A164VXS8	K-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021627 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	3.44025	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	3.499663	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	5.671492	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	3.580568	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	3.436031	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	1.112534	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.657494	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	1.129213	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	2.568892	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	2.603274	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	1.870582	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	1.188665	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.220701	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.693319	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.254964	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.513416	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.464924	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.335662	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.095524	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	13.114871		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	1.142262	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.365743	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	30.854837	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	22.551096	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	48.473331	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	12	jg10149, jg13374, jg14048, jg18452, jg1862, jg2350, jg29292 ... jg34008, jg37180, jg4859, jg7583, jg7584
Aizoaceae	Mesembryanthemum crystallinum	2	gene_1379, gene_14801
Amaranthaceae	Atriplex hortensis	2	Ah003718, Ah023110
Amaranthaceae	Beta vulgaris	1	BVRB_5g101250
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg23664, Sbi_jg49303, Sbi_jg7513
Amaranthaceae	Salicornia europaea	2	Seu_jg12523, Seu_jg5810
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00000344, GOSA_00001294
Amaranthaceae	Suaeda glauca	4	Sgl11207, Sgl16602, Sgl51869, Sgl57167
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000006308, gene:ENSEOMG00000014504 ... gene:ENSEOMG00000020221, gene:ENSEOMG00000027535, gene:ENSEOMG00000034051, gene:ENSEOMG00000047148
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0005650, CQ.Regalona.r1.2BG0024000 ... CQ.Regalona.r1.5AG0008500, CQ.Regalona.r1.5BG0008750
Anacardiaceae	Pistacia vera	2	pistato.v30003470, pistato.v30011980
Apiaceae	Apium graveolens	6	Ag10G00252, Ag11G03893, Ag5G02767, Ag6G01639, Ag9G00532 ... Ag9G02402
Arecaceae	Cocos nucifera	7	COCNU_07G007820, COCNU_07G007840, COCNU_08G007880 ... COCNU_08G007890, COCNU_09G003370, COCNU_10G006160, COCNU_15G004990
Arecaceae	Phoenix dactylifera	5	gene-LOC103696089, gene-LOC103697443, gene-LOC103702697 ... gene-LOC103706417, gene-LOC103710691
Asparagaceae	Asparagus officinalis	2	AsparagusV1_04.2369.V1.1, AsparagusV1_08.192.V1.1
Asteraceae	Flaveria trinervia	6	Ftri11G23769, Ftri15G21911, Ftri18G13582, Ftri3G09306 ... Ftri5G00137, Ftri9G28338
Brassicaceae	Arabidopsis thaliana	6	AT2G45660.1, AT4G11880.1, AT4G22950.1, AT5G51860.1 ... AT5G51870.3, AT5G62165.1
Brassicaceae	Eutrema salsugineum	7	Thhalv10001632m.g.v1.0, Thhalv10004954m.g.v1.0 ... Thhalv10014716m.g.v1.0, Thhalv10015303m.g.v1.0, Thhalv10026205m.g.v1.0, Thhalv10027077m.g.v1.0, Thhalv10028949m.g.v1.0
Brassicaceae	Schrenkiella parvula	8	Sp2g25340.v2.2, Sp4g27700.v2.2, Sp6g05600.v2.2 ... Sp6g14110.v2.2, Sp6g14120.v2.2, Sp6g14130.v2.2, Sp7g21040.v2.2, Sp7g23460.v2.2
Brassicaceae	Brassica nigra	16	BniB01g001370.2N, BniB02g029370.2N, BniB02g075810.2N ... BniB02g080150.2N, BniB02g081860.2N, BniB03g012800.2N, BniB03g021460.2N, BniB04g002420.2N, BniB04g002690.2N, BniB05g011830.2N, BniB05g014200.2N, BniB06g004060.2N, BniB06g010470.2N, BniB08g029500.2N, BniB08g029770.2N, BniB08g049570.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq01G2026, Ceq03G0484
Casuarinaceae	Casuarina glauca	3	Cgl01G2200, Cgl02G2131, Cgl03G0593
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno04g03110
Dunaliellaceae	Dunaliella salina	1	Dusal.0260s00006.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g03720, gene.Thate08g07680
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-11257, nbisL1-mrna-1588, nbisL1-mrna-6116
Nitrariaceae	Nitraria sibirica	6	evm.TU.LG01.2227, evm.TU.LG01.2228, evm.TU.LG01.2229 ... evm.TU.LG01.2230, evm.TU.LG04.978, evm.TU.LG10.1320
Plantaginaceae	Plantago ovata	4	Pov_00016808, Pov_00029041, Pov_00032202, Pov_00033562
Plumbaginaceae	Limonium bicolor	4	Lb1G04390, Lb1G04391, Lb1G04439, Lb2G10497
Poaceae	Echinochloa crus-galli	8	AH01.3086, AH01.5123, AH07.168, BH01.3428, BH01.5088 ... BH01.5259, BH07.33, CH01.3674
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0098670, gene-QOZ80_2AG0115010 ... gene-QOZ80_2BG0152160, gene-QOZ80_2BG0168790, gene-QOZ80_3AG0231610, gene-QOZ80_3BG0296260
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0054220.1, HORVU.MOREX.r3.1HG0054230.1 ... HORVU.MOREX.r3.4HG0412460.1, HORVU.MOREX.r3.6HG0540820.1
Poaceae	Lolium multiflorum	5	gene-QYE76_012332, gene-QYE76_017633, gene-QYE76_019242 ... gene-QYE76_019257, gene-QYE76_071315
Poaceae	Oryza coarctata	8	Oco03G000240, Oco04G000240, Oco05G001340, Oco06G001300 ... Oco11G000450, Oco12G000350, Oco19G008950, Oco20G008820
Poaceae	Oryza sativa	4	LOC_Os02g01355.1, LOC_Os03g03070.1, LOC_Os06g01890.1 ... LOC_Os10g39130.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G302600, gene-BS78_01G500700 ... gene-BS78_04G004400
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0100628, Pt_Chr0100645, Pt_Chr0200696, Pt_Chr0204710 ... Pt_Chr0503074, Pt_Chr0705413, Pt_Ctg00161
Poaceae	Sporobolus alterniflorus	9	Chr01G038570, Chr04G005950, Chr06G028760, Chr06G036350 ... Chr07G005660, Chr09G003640, Chr12G000820, Chr13G021300, Chr15G020020
Poaceae	Thinopyrum elongatum	8	Tel1E01G344500, Tel1E01G344800, Tel4E01G568600 ... Tel4E01G568700, Tel4E01G586900, Tel6E01G040900, Tel6E01G042600, Tel6E01G047500
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG030260, gene_TRIDC1AG030270 ... gene_TRIDC1BG035770, gene_TRIDC4BG058350, gene_TRIDC5AG073470, gene_TRIDC6AG001250
Poaceae	Triticum aestivum	12	TraesCS1A02G199600.2, TraesCS1A02G199900.1 ... TraesCS1B02G214500.1, TraesCS1B02G214600.1.cds1, TraesCS1D02G203300.2, TraesCS1D02G203400.1, TraesCS4B02G346700.1, TraesCS4D02G341700.1, TraesCS5A02G515500.1, TraesCS6A02G011700.1, TraesCS6B02G017900.1, TraesCS6D02G014600.1
Poaceae	Zea mays	3	Zm00001eb001670_P005, Zm00001eb393670_P002 ... Zm00001eb403750_P001
Poaceae	Zoysia japonica	6	nbis-gene-3104, nbis-gene-36177, nbis-gene-36179 ... nbis-gene-4697, nbis-gene-47065, nbis-gene-52305
Poaceae	Zoysia macrostachya	5	Zma_g12810, Zma_g14800, Zma_g15593, Zma_g2204, Zma_g4551
Portulacaceae	Portulaca oleracea	7	evm.TU.LG01.2786, evm.TU.LG04.2364, evm.TU.LG04.3456 ... evm.TU.LG10.274, evm.TU.LG16.130, evm.TU.LG17.268, evm.TU.LG19.1201
Posidoniaceae	Posidonia oceanica	1	gene.Posoc07g07470
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_11_RagTag.1315, evm.TU.Scaffold_4_RagTag.346 ... evm.TU.Scaffold_14_RagTag.255, evm.TU.Scaffold_16_RagTag.241, evm.TU.Scaffold_5_RagTag.341, evm.TU.Scaffold_9_RagTag.385
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-10913, nbisL1-mrna-18127, nbisL1-mrna-22484 ... nbisL1-mrna-29024
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-10074, nbisL1-mrna-15726, nbisL1-mrna-1606 ... nbisL1-mrna-18560, nbisL1-mrna-7439
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-12892, nbisL1-mrna-1960, nbisL1-mrna-20272 ... nbisL1-mrna-7119, nbisL1-mrna-8458
Rhizophoraceae	Kandelia candel	6	evm.TU.utg000003l.308, evm.TU.utg000006l.530 ... evm.TU.utg000007l.216, evm.TU.utg000008l.222, evm.TU.utg000010l.336, evm.TU.utg000022l.348
Rhizophoraceae	Kandelia obovata	6	Maker00000686, Maker00008916, Maker00009412, Maker00013628 ... Maker00014303, Maker00018317
Rhizophoraceae	Rhizophora apiculata	9	nbisL1-mrna-16087, nbisL1-mrna-19490, nbisL1-mrna-19491 ... nbisL1-mrna-19492, nbisL1-mrna-22672, nbisL1-mrna-3489, nbisL1-mrna-6875, nbisL1-mrna-6876, nbisL1-mrna-9239
Rhizophoraceae	Rhizophora mangle	11	nbisL1-mrna-10828, nbisL1-mrna-12717, nbisL1-mrna-12718 ... nbisL1-mrna-12719, nbisL1-mrna-12721, nbisL1-mrna-12722, nbisL1-mrna-12723, nbisL1-mrna-12724, nbisL1-mrna-20643, nbisL1-mrna-6633, nbisL1-mrna-6973
Salicaceae	Populus euphratica	7	populus_peu03482, populus_peu27801, populus_peu28876 ... populus_peu30275, populus_peu30566, populus_peu31740, populus_peu34322
Solanaceae	Lycium barbarum	9	gene-LOC132603858, gene-LOC132631808, gene-LOC132633009 ... gene-LOC132634991, gene-LOC132639068, gene-LOC132645637, gene-LOC132645638, gene-LOC132645639, gene-LOC132645640
Solanaceae	Solanum chilense	6	SOLCI002559400, SOLCI002559500, SOLCI004080500 ... SOLCI004571300, SOLCI004797500, SOLCI007115800
Solanaceae	Solanum pennellii	7	gene-LOC107001949, gene-LOC107006635, gene-LOC107009850 ... gene-LOC107009862, gene-LOC107013793, gene-LOC107021365, gene-LOC107027318
Tamaricaceae	Reaumuria soongarica	6	STRG.29203_chr11_+, gene_11143, gene_14129, gene_15148 ... gene_485, gene_5190
Tamaricaceae	Tamarix chinensis	1	TC03G2728
Zosteraceae	Zostera marina	3	Zosma01g41420.v3.1, Zosma02g06390.v3.1, Zosma02g24860.v3.1