Basic Information
Locus ID:
Ag9G00531
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 23893140 | 23906495 | + | Ag9G00531 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 56,130.07 Da | 38.34 | 89.76 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63520.1 | 0 | |
| RefSeq | XP_017257854.1 | PREDICTED: F-box/LRR-repeat protein At5g63520-like [Daucus carota subsp. sativus] | 0 |
| Q9FMV0 | F-box/LRR-repeat protein At5g63520 OS=Arabidopsis thaliana OX=3702 GN=At5g63520 PE=2 SV=1 | 0 | |
| TrEMBL | A0A161ZT82 | FIST_C domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021633 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 21.354038 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 18.549459 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 20.089619 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 19.323156 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 22.25569 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 12.805994 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 11.278093 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 6.331189 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 46.042202 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 44.785126 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 49.516682 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 47.76931 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 44.339901 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 35.900791 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 19.222115 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 21.061115 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 22.368378 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 21.213743 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 22.912172 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 20.591534 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 19.233051 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 28.318241 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 31.845613 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 29.666174 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 26.687248 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 23.896893 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 23.579014 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 19.779032 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 27.726713 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 5.734383 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.515307 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.048801 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 10.62194 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 16.007721 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 11.922996 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 8.773631 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 6.422455 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 8.223829 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 18.941149 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 11.617229 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.297361 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 14.507437 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 13.853173 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 22.51325 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 21.238533 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 20.45673 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 26.583269 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 43.18845 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 35.859818 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 35.673882 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg25604 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19814 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001758 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg27868 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg7393 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00027915 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl45880, Sgl50583 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005130, gene:ENSEOMG00000023275 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5AG0017180 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30012000 |
| Apiaceae | Apium graveolens | 3 | Ag10G00217, Ag9G00528, Ag9G00531 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G20861 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G63520.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004048m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g26610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g001850.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G2024 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2197 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.639 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00041574 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G27275, Lb5G27276 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.213, evm.TU.LG09.1454 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.344 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-12341, nbisL1-mrna-12730, nbisL1-mrna-20638 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1604 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1962 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.220 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001440 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14689 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1348 |
| Salicaceae | Populus euphratica | 7 | populus_peu10396, populus_peu18440, populus_peu18441 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132606259, gene-LOC132613423, gene-LOC132614512 |
| Solanaceae | Solanum chilense | 3 | SOLCI001088000, SOLCI001937300, SOLCI001937800 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107016212, gene-LOC107018107, gene-LOC107032176 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15390 |
| Tamaricaceae | Tamarix chinensis | 2 | TC08G0254, TC09G0822 |