Basic Information
Locus ID:
Ag9G00512
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 22732451 | 22734076 | + | Ag9G00512 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.16 | 40,990.88 Da | 42.15 | 86.03 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 176 | 204 | 5.8E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 311 | 336 | 6.3E-5 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 235 | 283 | 9.9E-13 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 72 | 121 | 1.3E-9 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 205 | 294 | 7.1E-24 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 18 | 129 | 8.9E-12 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 131 | 204 | 8.0E-12 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 295 | 355 | 5.4E-7 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 238 | 271 | 2.6E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 207 | 237 | 3.3E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 312 | 335 | 6.7E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 75 | 108 | 6.2E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 174 | 208 | 10.314641 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 236 | 270 | 12.221907 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 73 | 107 | 10.654441 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 307 | 341 | 8.911594 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15300.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_017258312.1 | PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Daucus carota subsp. sativus] | 0 |
| Q9LXF2 | Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E40 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J5ALK5 | Pentatricopeptide repeat-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_005096 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.679764 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.408852 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.885068 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.438245 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.332803 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.803512 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.188015 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.815574 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 2.803583 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 3.169244 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 2.910907 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 3.947856 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 2.764284 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 2.506322 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.246685 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.388584 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.421652 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.673756 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.105693 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.426752 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.848513 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.297554 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.412129 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.141817 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.520044 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 1.435187 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.47009 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.587364 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.953581 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.102748 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.245145 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.267705 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.884829 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.936025 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.428539 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.621697 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.17764 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.221875 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 1.411812 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.837207 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.481957 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.757782 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 2.113661 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 3.559575 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.203764 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.371043 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.143494 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 1.986419 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 1.736015 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 2.704007 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg40248 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17310 |
| Apiaceae | Apium graveolens | 1 | Ag9G00512 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G005640 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103698129, gene-LOC103705230 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.1676.V1.1, AsparagusV1_08.2249.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G29278 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G15300.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015396m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g28770.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g047570.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0301 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0247 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g03450 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10276 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.215 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00023553, Pov_00023554 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02185 |
| Poaceae | Echinochloa crus-galli | 4 | AH06.918, BH01.4781, BH06.950, CH01.5425 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0235190, gene-QOZ80_3BG0292930 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0403200.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_028919, gene-QYE76_070499 |
| Poaceae | Oryza coarctata | 4 | Oco05G003990, Oco06G004060, Oco11G005960, Oco12G006000 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g07234.1, LOC_Os06g12510.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G467500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0400350 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G036280, Chr0G008330, Chr12G003170, Chr14G004460 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G478100, Tel7E01G348900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG002620, gene_TRIDC4BG048960 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G019500.1.cds1, TraesCS4B02G284600.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb402420_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2789, nbis-gene-51389 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1989, Zma_g29398 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g28170 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15155 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-733 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-248 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000011l.67 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007133 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21441 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17318 |
| Salicaceae | Populus euphratica | 1 | populus_peu00672 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623484 |
| Solanaceae | Solanum chilense | 1 | SOLCI007491700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011981 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7291 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1296 |
| Zosteraceae | Zostera marina | 1 | Zosma01g04840.v3.1 |