halophFGD

Basic Information

Locus ID: Ag9G00511

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: CSC1-like protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	22720391	22730795	-	Ag9G00511

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.44	70,803.52 Da	41.16	106.03	0.31

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF14703	Cytosolic domain of 10TM putative phosphate transporter	186	330	6.0E-28	IPR027815
Pfam	PF02714	Calcium-dependent channel, 7TM region, putative phosphate	343	584	3.2E-55	IPR003864
Pfam	PF13967	Late exocytosis, associated with Golgi transport	6	165	1.6E-41	IPR032880
Coils	Coil	Coil	262	282	-	-

Gene Ontology

Cellular Component:

GO:0016020 (membrane)

KEGG Pathway

KO Term:

K21989 (calcium permeable stress-gated cation channel)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G01100.2	hypothetical protein 1. unknown protein, has cDNAs and ESTs associated to it
RefSeq	XP_017258307.1	PREDICTED: CSC1-like protein HYP1 isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q8GUH7	CSC1-like protein HYP1 OS=Arabidopsis thaliana OX=3702 GN=HYP1 PE=1 SV=1
TrEMBL	A0A161ZT63	CSC1-like protein HYP1 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021663 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	7.226847	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	5.270597	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	4.048108	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	4.12511	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	4.499483	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	3.106668	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	5.562261	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.629498	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	17.295181	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	16.541107	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	17.903431	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	17.747936	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	17.375513	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	14.002838	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	8.516707	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	13.786085	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	9.361874	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	13.087097	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	8.766446	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	8.498273	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	12.848933	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	13.850399	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	13.23371	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	17.198118	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	11.985957	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	13.372869	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	13.389873	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	13.297805	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	13.671859	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.830608		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	1.901091		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	1.504691		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	8.52957		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	4.553283		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	6.119557		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	4.485171		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	2.006635		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	2.29215		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	6.334888	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	3.031403	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.055193	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	2.475702	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	5.056156	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	9.414346	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	8.516568	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	1.782419	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	14.287664	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	11.234188	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	10.959954	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	9.403789	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg11387, jg17627, jg22683, jg40236
Aizoaceae	Mesembryanthemum crystallinum	3	gene_18273, gene_24652, gene_8564
Amaranthaceae	Atriplex hortensis	3	Ah013106, Ah019275, Ah032828
Amaranthaceae	Beta vulgaris	3	BVRB_2g040220, BVRB_2g040450, BVRB_6g153280
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg29720, Sbi_jg29856, Sbi_jg38235, Sbi_jg42989 ... Sbi_jg43241, Sbi_jg43313, Sbi_jg45595
Amaranthaceae	Salicornia europaea	3	Seu_jg11442, Seu_jg18573, Seu_jg18657
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00002094, GOSA_00004322, GOSA_00007049
Amaranthaceae	Suaeda glauca	8	Sgl22835, Sgl22851, Sgl27966, Sgl35670, Sgl41011, Sgl41065 ... Sgl66374, Sgl70709
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000000217, gene:ENSEOMG00000002313 ... gene:ENSEOMG00000014421, gene:ENSEOMG00000020190, gene:ENSEOMG00000030221, gene:ENSEOMG00000044244, gene:ENSEOMG00000044355, gene:ENSEOMG00000051206
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.2AG0006620, CQ.Regalona.r1.2BG0006850 ... CQ.Regalona.r1.3AG0000210, CQ.Regalona.r1.6AG0000490, CQ.Regalona.r1.6BG0000480
Anacardiaceae	Pistacia vera	5	pistato.v30042710, pistato.v30193850, pistato.v30194360 ... pistato.v30227400, pistato.v30281660
Apiaceae	Apium graveolens	6	Ag10G02821, Ag2G00462, Ag3G00101, Ag4G00941, Ag4G01876 ... Ag9G00511
Arecaceae	Cocos nucifera	3	COCNU_05G000730, COCNU_06G016940, COCNU_06G019610
Arecaceae	Phoenix dactylifera	3	gene-LOC103700851, gene-LOC103707526, gene-LOC103713672
Asparagaceae	Asparagus officinalis	4	AsparagusV1_03.2134.V1.1, AsparagusV1_03.752.V1.1 ... AsparagusV1_07.3110.V1.1, AsparagusV1_08.1815.V1.1
Asteraceae	Flaveria trinervia	4	Ftri16G02641, Ftri18G25470, Ftri18G30644, Ftri5G29657
Brassicaceae	Arabidopsis thaliana	4	AT1G10090.1, AT1G58520.2, AT1G69450.1, AT3G01100.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10006880m.g.v1.0, Thhalv10018196m.g.v1.0 ... Thhalv10020163m.g.v1.0, Thhalv10023298m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g08740.v2.2, Sp2g05100.v2.2, Sp3g01010.v2.2 ... Sp5g24510.v2.2
Brassicaceae	Brassica nigra	6	BniB01g060860.2N, BniB02g059970.2N, BniB03g003720.2N ... BniB03g046800.2N, BniB07g034930.2N, BniB07g045610.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq03G1246, Ceq07G0185, Ceq08G0319, Ceq08G0320
Casuarinaceae	Casuarina glauca	3	Cgl03G1352, Cgl07G0188, Cgl08G0265
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno01g09500, gene.Cymno01g14680, gene.Cymno14g06680
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g10730, gene.Thate02g36620
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-1186
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG02.233, evm.TU.LG03.309, evm.TU.LG06.296 ... evm.TU.LG09.297
Plantaginaceae	Plantago ovata	3	Pov_00025673, Pov_00028001, Pov_00037104
Plumbaginaceae	Limonium bicolor	7	Lb1G02201, Lb4G23357, Lb6G32606, Lb6G32621, Lb7G32959 ... Lb7G32971, Lb7G33032
Poaceae	Echinochloa crus-galli	13	AH01.1435, AH01.758, AH05.3898, AH05.4201, BH01.1208 ... BH01.900, BH05.3950, BH05.4284, BH08.1535, CH01.1263, CH01.918, CH05.4170, CH05.4514
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_3AG0221870, gene-QOZ80_3BG0263370 ... gene-QOZ80_3BG0267040, gene-QOZ80_5AG0395720, gene-QOZ80_5AG0399420, gene-QOZ80_5BG0448130
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.4HG0334050.1, HORVU.MOREX.r3.4HG0338820.1 ... HORVU.MOREX.r3.5HG0420970.1, HORVU.MOREX.r3.5HG0420980.1, HORVU.MOREX.r3.5HG0439090.1
Poaceae	Lolium multiflorum	10	gene-QYE76_000134, gene-QYE76_000137, gene-QYE76_000412 ... gene-QYE76_000416, gene-QYE76_001204, gene-QYE76_026797, gene-QYE76_026839, gene-QYE76_055357, gene-QYE76_062222, gene-QYE76_063118
Poaceae	Oryza coarctata	8	Oco05G020040, Oco05G022300, Oco06G020830, Oco06G023190 ... Oco23G009320, Oco23G011170, Oco24G009050, Oco24G010990
Poaceae	Oryza sativa	4	LOC_Os03g47070.1, LOC_Os03g51620.1, LOC_Os12g39320.1 ... LOC_Os12g43720.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G097500, gene-BS78_01G128100 ... gene-BS78_08G120400, gene-BS78_08G166900
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0104722, Pt_Chr0104751, Pt_Chr0107451, Pt_Chr0107484 ... Pt_Chr0602158, Pt_Chr0602546, Pt_Chr0704081
Poaceae	Sporobolus alterniflorus	13	Chr01G006470, Chr01G008400, Chr04G018010, Chr04G019850 ... Chr04G027660, Chr06G018600, Chr06G020790, Chr07G026580, Chr08G010630, Chr12G028770, Chr19G007080, Chr27G008050, Chr27G009820
Poaceae	Thinopyrum elongatum	5	Tel4E01G046400, Tel4E01G096700, Tel5E01G028100 ... Tel5E01G028200, Tel5E01G146500
Poaceae	Triticum dicoccoides	9	gene_TRIDC4AG040300, gene_TRIDC4AG044900 ... gene_TRIDC4BG003810, gene_TRIDC4BG004060, gene_TRIDC4BG008850, gene_TRIDC5AG002040, gene_TRIDC5AG010770, gene_TRIDC5BG001850, gene_TRIDC5BG012680
Poaceae	Triticum aestivum	16	TraesCS4A02G257600.1, TraesCS4A02G291700.1 ... TraesCS4B02G022300.1, TraesCS4B02G023400.1, TraesCS4B02G056900.1, TraesCS4D02G020100.2, TraesCS4D02G057200.1, TraesCS5A02G012500.1, TraesCS5A02G012600.2, TraesCS5A02G071400.1, TraesCS5B02G010700.1, TraesCS5B02G010800.2, TraesCS5B02G077400.1, TraesCS5D02G018000.1, TraesCS5D02G018100.1, TraesCS5D02G083600.1
Poaceae	Zea mays	4	Zm00001eb030220_P001, Zm00001eb052100_P001 ... Zm00001eb134200_P002, Zm00001eb215680_P001
Poaceae	Zoysia japonica	3	nbis-gene-15992, nbis-gene-30439, nbis-gene-54160
Poaceae	Zoysia macrostachya	5	Zma_g25256, Zma_g25406, Zma_g26035, Zma_g2904, Zma_g3077
Portulacaceae	Portulaca oleracea	7	evm.TU.LG03.588, evm.TU.LG04.2815, evm.TU.LG12.1142 ... evm.TU.LG12.1492, evm.TU.LG13.435, evm.TU.LG16.842, evm.TU.LG21.134
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g19930, gene.Posoc03g27390, gene.Posoc06g18700
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.60367.2, evm.TU.60368.1, evm.TU.Scaffold_7_RagTag.856 ... evm.TU.Scaffold_15_RagTag.593, evm.TU.Scaffold_8_RagTag.874
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-19313, nbisL1-mrna-2205, nbisL1-mrna-26765 ... nbisL1-mrna-9360
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-11710, nbisL1-mrna-11746, nbisL1-mrna-14449 ... nbisL1-mrna-1802
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-15776, nbisL1-mrna-20599, nbisL1-mrna-2939
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000001l.300, evm.TU.utg000018l.256 ... evm.TU.utg000019l.170
Rhizophoraceae	Kandelia obovata	4	Maker00001605, Maker00002669, Maker00003460, Maker00010434
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-11363, nbisL1-mrna-11467, nbisL1-mrna-12151 ... nbisL1-mrna-13106
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-10104, nbisL1-mrna-17094, nbisL1-mrna-18257 ... nbisL1-mrna-23484, nbisL1-mrna-25284
Salicaceae	Populus euphratica	4	populus_peu06758, populus_peu09385, populus_peu20652 ... populus_peu32103
Solanaceae	Lycium barbarum	4	gene-LOC132604049, gene-LOC132604050, gene-LOC132623191 ... gene-LOC132627733
Solanaceae	Solanum chilense	3	SOLCI001736500, SOLCI001794400, SOLCI005645200
Solanaceae	Solanum pennellii	3	gene-LOC107007382, gene-LOC107011582, gene-LOC107017267
Tamaricaceae	Reaumuria soongarica	6	STRG.29417_chr10_+, gene_1078, gene_14523, gene_2109 ... gene_3892, gene_6438
Tamaricaceae	Tamarix chinensis	5	TC01G1260, TC01G3027, TC02G0798, TC03G0801, TC04G2734
Zosteraceae	Zostera marina	4	Zosma03g29320.v3.1, Zosma05g18670.v3.1, Zosma06g01970.v3.1 ... Zosma06g22270.v3.1