Basic Information
Locus ID:
Ag9G00507
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 22680951 | 22687954 | - | Ag9G00507 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 52,894.25 Da | 42.03 | 74.81 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 183 | 225 | 3.4E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 131 | 180 | 0.01 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 110 | 447 | 1.47E-36 | IPR036322 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 76 | 2.29E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 84 | 2.8E-7 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 232 | 438 | 3.4E-18 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 105 | 231 | 1.3E-18 | IPR015943 |
| SMART | SM00320 | WD40_4 | 367 | 405 | 4.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 129 | 181 | 0.0013 | IPR001680 |
| SMART | SM00320 | WD40_4 | 234 | 274 | 0.038 | IPR001680 |
| SMART | SM00320 | WD40_4 | 182 | 225 | 4.6E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 241 | 283 | 10.809215 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 189 | 228 | 10.374778 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 189 | 228 | 8.729241 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 261 | 275 | 1.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 212 | 226 | 1.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 168 | 182 | 1.9E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017256889.1 | PREDICTED: dynein assembly factor with WDR repeat domains 1-like [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164VWL3 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021668 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 12.737342 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.866846 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.31104 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 10.096828 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 9.522217 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 14.219254 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 10.395439 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 14.315304 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 10.960876 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 11.046047 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 11.52599 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 12.269863 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 14.345807 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 12.218977 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.614326 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 5.908142 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.830553 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.836037 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.784514 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 3.413303 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 6.928565 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 4.786489 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 5.585231 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.200879 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 4.136193 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 5.981555 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.119166 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.557088 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 4.4133 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.70985 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.424589 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.914204 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.154484 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.066326 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.813685 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.674822 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.154118 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.765315 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 9.906783 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.626322 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.983038 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.620391 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 7.063544 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 11.689279 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 13.211905 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.933065 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 9.792085 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 7.319109 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 5.995103 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 6.100033 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17857 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20200 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032643 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29793, Sbi_jg43303 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18584 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00004333, GOSA_00004335, GOSA_00004336 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66384, Sgl70719 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013571, gene:ENSEOMG00000020749 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.2AG0005600 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30195110 |
| Apiaceae | Apium graveolens | 1 | Ag9G00507 |
| Arecaceae | Cocos nucifera | 1 | scaffold016592G000050 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721330 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2255.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G01721 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1734 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1786 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g00840 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g14100 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.155, evm.TU.LG02.2388 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02253 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.367, BH02.392, CH02.435 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0012600, gene-QOZ80_1BG0061250 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0237370.1 |
| Poaceae | Oryza coarctata | 2 | Oco01G003670, Oco02G003720 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g09020.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G035600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0200036, Pt_Chr0200042 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr03G006050, Chr08G006490 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G192400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG013750, gene_TRIDC3BG018230 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G111300.1, TraesCS3B02G130100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb121640_P003, Zm00001eb204740_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6754 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10096 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1149, evm.TU.LG25.210 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g10640 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.257 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15097 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-211 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007287 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11811 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17361 |
| Salicaceae | Populus euphratica | 2 | populus_peu24477, populus_peu24484 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623117 |
| Solanaceae | Solanum chilense | 1 | SOLCI000207600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012054 |