halophFGD

Basic Information

Locus ID: Ag9G00499

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: inactive receptor kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	22499839	22501821	-	Ag9G00499

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.28	69,354.16 Da	35.39	90.59	-0.19

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF08263	Leucine rich repeat N-terminal domain	30	67	5.5E-4	IPR013210
Pfam	PF00069	Protein kinase domain	350	602	5.2E-26	IPR000719
SUPERFAMILY	SSF52058	L domain-like	40	213	6.32E-21	-
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	350	612	7.76E-47	IPR011009
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	194	240	2.1E-8	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	24	193	3.3E-26	IPR032675
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	423	623	1.2E-36	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	310	421	2.6E-13	-
ProSiteProfiles	PS50011	Protein kinase domain profile.	346	609	24.824263	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	352	375	-	IPR017441

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04730 (interleukin-1 receptor-associated kinase 1 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G26730.1	Leucine-rich repeat protein kinase family protein.
RefSeq	XP_017256561.1	PREDICTED: probable inactive receptor kinase At2g26730 [Daucus carota subsp. sativus]
Swiss-Prot	O48788	Probable inactive receptor kinase At2g26730 OS=Arabidopsis thaliana OX=3702 GN=At2g26730 PE=1 SV=1
TrEMBL	A0A161ZT55	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021673 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.063245	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.041889	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.092503	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.068575	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.05107	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.211967	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.495034	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.133227	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.195925	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.155452	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.044728	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.121448	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.133244	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.028197	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.152345	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg13052, jg25818, jg25819, jg40347, jg40348
Anacardiaceae	Pistacia vera	1	pistato.v30138890
Apiaceae	Apium graveolens	5	Ag10G00153, Ag4G00289, Ag4G00297, Ag4G00785, Ag9G00499
Arecaceae	Cocos nucifera	2	COCNU_01G009190, COCNU_05G006690
Arecaceae	Phoenix dactylifera	1	gene-LOC103700918
Asparagaceae	Asparagus officinalis	1	AsparagusV1_05.2324.V1.1
Asteraceae	Flaveria trinervia	5	Ftri10G25281, Ftri18G03286, Ftri18G12578, Ftri18G12716 ... Ftri1G32673
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G1803, Ceq04G1892
Casuarinaceae	Casuarina glauca	1	Cgl02G1879
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g11620, gene.Thate05g00280
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-10309
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG10.790
Plantaginaceae	Plantago ovata	3	Pov_00022070, Pov_00022071, Pov_00023344
Poaceae	Echinochloa crus-galli	3	AH03.1767, BH03.1919, CH03.2104
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_6AG0533950, gene-QOZ80_6BG0486990
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.5HG0477560.1
Poaceae	Lolium multiflorum	1	gene-QYE76_004929
Poaceae	Oryza coarctata	1	Oco18G003800
Poaceae	Oryza sativa	2	LOC_Os09g20970.1, LOC_Os10g24850.1
Poaceae	Paspalum vaginatum	1	gene-BS78_02G169600
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0702443
Poaceae	Sporobolus alterniflorus	3	Chr10G011030, Chr14G013160, Chr21G012290
Poaceae	Thinopyrum elongatum	3	Tel2E01G954300, Tel2E01G954400, Tel5E01G332300
Poaceae	Triticum dicoccoides	2	gene_TRIDC5AG032100, gene_TRIDC5BG033730
Poaceae	Triticum aestivum	3	TraesCS5A02G198400.1, TraesCS5B02G197100.1 ... TraesCS5D02G204300.1
Poaceae	Zea mays	1	Zm00001eb311540_P001
Poaceae	Zoysia japonica	4	nbis-gene-19938, nbis-gene-30962, nbis-gene-30963 ... nbis-gene-51827
Poaceae	Zoysia macrostachya	2	Zma_g30245, Zma_g32478
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_11_RagTag.992, evm.TU.Scaffold_3_RagTag.1867 ... evm.TU.Scaffold_4_RagTag.494, evm.TU.Scaffold_4_RagTag.495, evm.TU.Scaffold_6_RagTag.186
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-14676, nbisL1-mrna-15000, nbisL1-mrna-2309 ... nbisL1-mrna-2643, nbisL1-mrna-28870
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-15594, nbisL1-mrna-20383, nbisL1-mrna-475
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-12560, nbisL1-mrna-153, nbisL1-mrna-1838 ... nbisL1-mrna-3039, nbisL1-mrna-3040
Rhizophoraceae	Kandelia candel	2	add.evm.TU.utg000019l.35, evm.TU.utg000010l.93
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-11850, nbisL1-mrna-21549
Salicaceae	Populus euphratica	2	populus_peu28608, populus_peu30069
Solanaceae	Lycium barbarum	2	gene-LOC132634233, gene-LOC132643745
Solanaceae	Solanum chilense	2	SOLCI003433400, SOLCI003578500
Solanaceae	Solanum pennellii	2	gene-LOC107004058, gene-LOC107012999