halophFGD

Basic Information

Locus ID: Ag9G00482

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: AO

Description: Catalyzes the oxidation of L-aspartate to iminoaspartate

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	22154423	22160724	+	Ag9G00482

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.83	77,731.00 Da	46.40	90.19	-0.15

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00890	FAD binding domain	146	530	3.1E-92	IPR003953
Pfam	PF02910	Fumarate reductase flavoprotein C-term	586	674	2.6E-16	IPR015939
SUPERFAMILY	SSF51905	FAD/NAD(P)-binding domain	140	554	1.61E-64	IPR036188
SUPERFAMILY	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain	367	491	2.39E-37	IPR027477
SUPERFAMILY	SSF46977	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain	582	677	4.32E-25	IPR037099
Gene3D	G3DSA:1.20.58.100	-	578	690	2.4E-30	-
Gene3D	G3DSA:3.90.700.10	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain	377	499	4.7E-158	IPR027477
Gene3D	G3DSA:3.50.50.60	-	146	540	4.7E-158	IPR036188
TIGRFAM	TIGR00551	nadB: L-aspartate oxidase	145	671	1.1E-165	IPR005288
PRINTS	PR00368	FAD-dependent pyridine nucleotide reductase signature	147	166	5.8E-6	-
PRINTS	PR00368	FAD-dependent pyridine nucleotide reductase signature	493	515	5.8E-6	-

Gene Ontology

Biological Process:

GO:0009435 (NAD biosynthetic process)

Molecular Function:

GO:0008734 (L-aspartate oxidase activity) GO:0016491 (oxidoreductase activity)

KEGG Pathway

KO Term:

K00278 (L-aspartate oxidase [EC:1.4.3.16])

Pathway:

ko00250 (Alanine, aspartate and glutamate metabolism) map00250 (Alanine, aspartate and glutamate metabolism) ko00760 (Nicotinate and nicotinamide metabolism) map00760 (Nicotinate and nicotinamide metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways)

Module:

M00115 (NAD biosynthesis, aspartate => quinolinate => NAD)

Reaction:

R00357 (L-Aspartate + H2O + Oxygen <=> Oxaloacetate + Ammonia + Hydrogen peroxide) R00481 (L-Aspartate + Oxygen <=> Iminoaspartate + Hydrogen peroxide)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G14760.1	L-aspartate oxidase. At5g14760 encodes for L-aspartate oxidase involved in the early steps of NAD biosynthesis. In contrary to the EC 1.4.3.16 (l-aspartate oxidase - deaminating) the enzyme catalyzes the reaction L-aspartate + O2 = iminoaspartate (alpha-iminosuccinate) + H2O2
RefSeq	XP_017255055.1	PREDICTED: L-aspartate oxidase, chloroplastic [Daucus carota subsp. sativus]
Swiss-Prot	A0A1S3YEG8	L-aspartate oxidase 2-a, chloroplastic OS=Nicotiana tabacum OX=4097 GN=AO-2A PE=3 SV=1
TrEMBL	A0A161YDW0	L-aspartate oxidase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021686 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.054537	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.53049	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.220791	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.360764	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.494651	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.198237	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.275747	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.476418	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	2.60529	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	2.178505	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	1.995129	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	1.396689	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	2.697332	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	1.91641	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	1.584442	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	2.480041	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	1.901394	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	3.535537	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	4.849009	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	9.032681	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	9.126117	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	5.534645	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	3.561974	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	4.589525	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	5.147144	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	4.75736	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	1.555118	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	4.176934	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	2.300496	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	28.062143		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	14.16746		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	12.540919		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	3.340253		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	5.108232		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	5.775954		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	5.800703		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	16.942629		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	19.545919		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	2.497507	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	16.098358	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	35.147339	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	98.298637	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	23.695459	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	1.121474	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	1.143826	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	41.740177	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.364361	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	1.930451	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	3.977965	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	3.941106	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg30478
Aizoaceae	Mesembryanthemum crystallinum	1	gene_25576
Amaranthaceae	Atriplex hortensis	1	Ah002582
Amaranthaceae	Beta vulgaris	1	BVRB_9g203200
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg40838, Sbi_jg50800
Amaranthaceae	Salicornia europaea	1	Seu_jg2350
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00023350, GOSA_00026586
Amaranthaceae	Suaeda glauca	3	Sgl43485, Sgl48286, Sgl48290
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000006711, gene:ENSEOMG00000022818 ... gene:ENSEOMG00000024501
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.2AG0009900, CQ.Regalona.r1.5AG0013260 ... CQ.Regalona.r1.5BG0013740
Anacardiaceae	Pistacia vera	1	pistato.v30034720
Apiaceae	Apium graveolens	1	Ag9G00482
Arecaceae	Cocos nucifera	1	COCNU_05G010120
Arecaceae	Phoenix dactylifera	1	gene-LOC103701985
Asparagaceae	Asparagus officinalis	1	AsparagusV1_01.2776.V1.1
Asteraceae	Flaveria trinervia	2	Ftri18G17457, FtriNA30795
Brassicaceae	Arabidopsis thaliana	1	AT5G14760.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10015655m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp6g29280.v2.2
Brassicaceae	Brassica nigra	2	BniB02g048020.2N, BniB06g038970.2N
Casuarinaceae	Casuarina glauca	1	Cgl02G1905
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno07g07250
Dunaliellaceae	Dunaliella salina	2	Dusal.0152s00007.v1.0, Dusal.0152s00008.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate07g20210
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-10317
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG05.371, evm.TU.LG05.377
Plantaginaceae	Plantago ovata	2	Pov_00017566, Pov_00023308
Plumbaginaceae	Limonium bicolor	1	Lb5G29154
Poaceae	Echinochloa crus-galli	4	AH07.302, AH09.1150, BH07.400, CH03.4520
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_2AG0100880, gene-QOZ80_2BG0154160
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.6HG0555040.1
Poaceae	Lolium multiflorum	1	gene-QYE76_020090
Poaceae	Oryza coarctata	2	Oco03G001940, Oco04G001760
Poaceae	Oryza sativa	1	LOC_Os02g04170.1
Poaceae	Paspalum vaginatum	1	gene-BS78_04G029900
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0201406, Pt_Chr0201441
Poaceae	Sporobolus alterniflorus	2	Chr06G035250, Chr15G026610
Poaceae	Thinopyrum elongatum	1	Tel6E01G224400
Poaceae	Triticum dicoccoides	2	gene_TRIDC6AG012870, gene_TRIDC6BG017930
Poaceae	Triticum aestivum	3	TraesCS6A02G099200.1, TraesCS6B02G127300.1 ... TraesCS6D02G083200.1
Poaceae	Zea mays	2	Zm00001eb063820_P001, Zm00001eb231540_P001
Poaceae	Zoysia japonica	1	nbis-gene-33784
Poaceae	Zoysia macrostachya	1	Zma_g12156
Portulacaceae	Portulaca oleracea	2	evm.TU.LG01.2158, evm.TU.LG14.1337
Posidoniaceae	Posidonia oceanica	1	gene.Posoc04g20690
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_3_RagTag.1887
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-2326, nbisL1-mrna-2623
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-17827
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-3056
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000019l.87
Rhizophoraceae	Kandelia obovata	1	Maker00001958
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-12062
Salicaceae	Populus euphratica	1	populus_peu01047
Solanaceae	Lycium barbarum	1	gene-LOC132636316
Solanaceae	Solanum chilense	1	SOLCI007030000
Solanaceae	Solanum pennellii	1	gene-LOC107007609
Tamaricaceae	Reaumuria soongarica	1	gene_13830
Tamaricaceae	Tamarix chinensis	1	TC01G2229
Zosteraceae	Zostera marina	1	Zosma04g19490.v3.1