halophFGD

Basic Information

Locus ID: Ag9G00469

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the DEAD box helicase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	21591729	21597013	-	Ag9G00469

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.43	60,987.17 Da	45.38	76.33	-0.52

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd18787	SF2_C_DEAD	326	455	1.80211E-61	-
CDD	cd00201	WW	13	42	2.87936E-5	IPR001202
Pfam	PF00270	DEAD/DEAH box helicase	131	301	1.0E-49	IPR011545
Pfam	PF00271	Helicase conserved C-terminal domain	338	446	4.0E-33	IPR001650
Pfam	PF00397	WW domain	12	42	2.9E-7	IPR001202
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	251	459	1.25E-57	IPR027417
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	90	314	6.19E-74	IPR027417
SUPERFAMILY	SSF51045	WW domain	5	43	1.19E-8	IPR036020
Gene3D	G3DSA:3.40.50.300	-	82	316	1.1E-89	IPR027417
Gene3D	G3DSA:3.40.50.300	-	317	487	2.1E-57	IPR027417
Gene3D	G3DSA:2.20.70.10	-	7	56	2.7E-6	-
SMART	SM00490	helicmild6	366	446	1.1E-33	IPR001650
SMART	SM00487	ultradead3	126	329	3.5E-64	IPR014001
SMART	SM00456	ww_5	11	44	5.9E-7	IPR001202
ProSiteProfiles	PS51195	DEAD-box RNA helicase Q motif profile.	107	135	11.768322	IPR014014
ProSiteProfiles	PS51194	Superfamilies 1 and 2 helicase C-terminal domain profile.	341	485	24.939232	IPR001650
ProSiteProfiles	PS50020	WW/rsp5/WWP domain profile.	10	44	11.289901	IPR001202
ProSiteProfiles	PS51192	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	138	312	30.867685	IPR014001
ProSitePatterns	PS01159	WW/rsp5/WWP domain signature.	16	42	-	IPR001202
ProSitePatterns	PS00039	DEAD-box subfamily ATP-dependent helicases signature.	258	266	-	IPR000629
MobiDBLite	mobidb-lite	consensus disorder prediction	44	58	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	59	83	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	478	558	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	38	83	-	-

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0003724 (RNA helicase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K12823 (ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7])

Pathway:

ko03040 (Spliceosome) map03040 (Spliceosome)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G01540.1	DEAD box RNA helicase 1. RNA HELICASE DRH1
RefSeq	XP_017258019.1	PREDICTED: ATP-dependent RNA helicase-like protein DB10 [Daucus carota subsp. sativus]
Swiss-Prot	P46942	ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris OX=4096 PE=2 SV=1
TrEMBL	A0A164VVQ9	DEAD-box ATP-dependent RNA helicase 14 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021704 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	96.180237	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	57.215729	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	76.461555	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	70.09124	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	69.54586	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	89.096046	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	77.889229	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	91.648521	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	117.113739	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	113.062721	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	114.938614	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	124.534523	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	131.005615	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	126.881203	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	111.234367	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	117.424927	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	95.156593	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	120.399841	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	116.115089	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	112.846298	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	108.910133	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	147.541626	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	188.641907	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	131.801987	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	146.760239	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	123.852402	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	120.050346	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	107.764687	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	109.652893	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	192.80191		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	204.532333		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	166.074631		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	170.692657		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	130.837753		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	206.763474		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	149.379501		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	131.775803		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	151.071823		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	116.250244	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	87.436317	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	55.980644	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	380.02182	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	607.215149	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	670.076538	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	630.203125	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	215.528244	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	434.153412	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	178.268845	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	201.99617	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	196.119553	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg17783, jg25242, jg28141, jg30472
Aizoaceae	Mesembryanthemum crystallinum	2	gene_15660, gene_9657
Amaranthaceae	Atriplex hortensis	2	Ah006988, Ah019962
Amaranthaceae	Beta vulgaris	1	BVRB_3g059690
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg19152, Sbi_jg37572, Sbi_jg38186, Sbi_jg6317
Amaranthaceae	Salicornia europaea	1	Seu_jg5415
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00003645, GOSA_00024097
Amaranthaceae	Suaeda glauca	4	Sgl01602, Sgl06767, Sgl25149, Sgl30306
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000008730, gene:ENSEOMG00000014449 ... gene:ENSEOMG00000027441, gene:ENSEOMG00000028728, gene:ENSEOMG00000029868, gene:ENSEOMG00000043082, gene:ENSEOMG00000044111
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.3AG0012760, CQ.Regalona.r1.3BG0012840 ... CQ.Regalona.r1.4AG0012060, CQ.Regalona.r1.4BG0014130, CQ.Regalona.r1.6BG0013600
Anacardiaceae	Pistacia vera	2	pistato.v30022650, pistato.v30232460
Apiaceae	Apium graveolens	4	Ag3G00863, Ag4G00762, Ag8G01814, Ag9G00469
Arecaceae	Cocos nucifera	5	COCNU_01G000190, COCNU_06G008480, COCNU_12G000320 ... COCNU_13G000250, COCNU_14G005640
Arecaceae	Phoenix dactylifera	8	gene-LOC103696445, gene-LOC103697068, gene-LOC103699024 ... gene-LOC103700537, gene-LOC103708171, gene-LOC103709291, gene-LOC120103868, gene-LOC120107480
Asparagaceae	Asparagus officinalis	2	AsparagusV1_05.2606.V1.1, AsparagusV1_Unassigned.981.V1.1
Asteraceae	Flaveria trinervia	4	Ftri14G00143, Ftri17G31092, Ftri18G01135, Ftri18G10066
Brassicaceae	Arabidopsis thaliana	3	AT3G01540.2, AT3G06480.1, AT5G14610.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10012853m.g.v1.0, Thhalv10019956m.g.v1.0 ... Thhalv10020294m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp3g00510.v2.2, Sp3g05420.v2.2, Sp6g29420.v2.2
Brassicaceae	Brassica nigra	4	BniB03g024570.2N, BniB05g023920.2N, BniB07g035150.2N ... BniB07g061920.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G1848, Ceq09G1405
Casuarinaceae	Casuarina glauca	2	Cgl02G1928, Cgl09G1497
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g14540, gene.Cymno05g06030
Dunaliellaceae	Dunaliella salina	3	Dusal.0159s00016.v1.0, Dusal.0313s00016.v1.0 ... Dusal.0466s00003.v1.0
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate01g16740, gene.Thate03g22960, gene.Thate07g15880 ... gene.Thate07g20340, gene.Thate08g09890
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-10321, nbisL1-mrna-10828, nbisL1-mrna-5121
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG05.347, evm.TU.LG11.1127
Plantaginaceae	Plantago ovata	2	Pov_00022541, Pov_00023282
Plumbaginaceae	Limonium bicolor	6	Lb0G38389, Lb1G01074, Lb3G21004, Lb4G23074, Lb4G23091 ... Lb6G31402
Poaceae	Echinochloa crus-galli	8	AH02.2020, AH02.491, BH02.2063, BH02.509, BH04.2247 ... CH02.2238, CH02.554, CH04.2668
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0011430, gene-QOZ80_1AG0020850 ... gene-QOZ80_1BG0060060, gene-QOZ80_1BG0070640, gene-QOZ80_9AG0692600, gene-QOZ80_9BG0718670
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.3HG0235240.1, HORVU.MOREX.r3.3HG0241770.1 ... HORVU.MOREX.r3.3HG0263860.2
Poaceae	Lolium multiflorum	4	gene-QYE76_049862, gene-QYE76_050047, gene-QYE76_050641 ... gene-QYE76_050642
Poaceae	Oryza coarctata	6	Oco01G002920, Oco01G012350, Oco02G002950, Oco02G012490 ... Oco21G009940, Oco22G011230
Poaceae	Paspalum vaginatum	3	gene-BS78_03G048300, gene-BS78_03G161600 ... gene-BS78_10G033300
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0200386, Pt_Chr0205346, Pt_Chr0205422, Pt_Chr0207382 ... Pt_Chr0602973
Poaceae	Sporobolus alterniflorus	11	Chr02G017740, Chr02G019670, Chr03G005120, Chr03G008880 ... Chr05G010680, Chr05G016270, Chr07G013810, Chr07G013820, Chr08G005570, Chr08G009630, Chr31G008570
Poaceae	Thinopyrum elongatum	4	Tel3E01G174600, Tel3E01G220000, Tel3E01G350700 ... Tel6E01G262700
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG012140, gene_TRIDC3AG016280 ... gene_TRIDC3AG027580, gene_TRIDC3BG016350, gene_TRIDC3BG021180, gene_TRIDC3BG034140
Poaceae	Triticum aestivum	9	TraesCS3A02G100200.1, TraesCS3A02G130200.4 ... TraesCS3A02G194200.1, TraesCS3B02G117000.1, TraesCS3B02G149300.8, TraesCS3B02G230800.1, TraesCS3D02G100900.1, TraesCS3D02G131100.11, TraesCS3D02G202500.3
Poaceae	Zea mays	6	Zm00001eb116020_P003, Zm00001eb122880_P005 ... Zm00001eb162370_P006, Zm00001eb164820_P006, Zm00001eb336740_P003, Zm00001eb356610_P001
Poaceae	Zoysia japonica	4	nbis-gene-13146, nbis-gene-13358, nbis-gene-21446 ... nbis-gene-47334
Poaceae	Zoysia macrostachya	4	Zma_g10458, Zma_g19150, Zma_g7691, Zma_g8056
Portulacaceae	Portulaca oleracea	5	evm.TU.LG08.1532, evm.TU.LG13.1077, evm.TU.LG16.1487 ... evm.TU.LG22.424, evm.TU.LG26.179
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g13160, gene.Posoc04g21230
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_3_RagTag.1912, evm.TU.Scaffold_3_RagTag.696 ... evm.TU.Scaffold_3_RagTag.697
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-1272, nbisL1-mrna-2387, nbisL1-mrna-2585
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-18471, nbisL1-mrna-6763
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-3081, nbisL1-mrna-6378
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000019l.70, evm.TU.utg000019l.795
Rhizophoraceae	Kandelia obovata	2	Maker00002328, Maker00012931
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-12042, nbisL1-mrna-5258
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-13130
Salicaceae	Populus euphratica	5	populus_peu01062, populus_peu20741, populus_peu24415 ... populus_peu24416, populus_peu25681
Solanaceae	Lycium barbarum	3	gene-LOC132616981, gene-LOC132621482, gene-LOC132626705
Solanaceae	Solanum chilense	3	SOLCI000100200, SOLCI000775400, SOLCI001041500
Solanaceae	Solanum pennellii	3	gene-LOC107004850, gene-LOC107007111, gene-LOC107011069
Tamaricaceae	Reaumuria soongarica	3	STRG.23246_chr05_+, gene_1240, gene_937
Tamaricaceae	Tamarix chinensis	3	TC01G3600, TC03G0968, TC12G1724
Zosteraceae	Zostera marina	2	Zosma01g32110.v3.1, Zosma01g37020.v3.1