Basic Information
Locus ID:
Ag9G00461
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
RCK
Description:
Sec63 Brl domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 21399532 | 21407428 | + | Ag9G00461 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.33 | 119,665.98 Da | 44.91 | 85.89 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18795 | SF2_C_Ski2 | 135 | 325 | 5.68935E-53 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 29 | 109 | 2.8E-9 | IPR011545 |
| Pfam | PF02889 | Sec63 Brl domain | 435 | 750 | 1.4E-41 | IPR004179 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 168 | 311 | 9.2E-9 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 22 | 281 | 2.38E-15 | IPR027417 |
| SUPERFAMILY | SSF158702 | Sec63 N-terminal domain-like | 462 | 650 | 2.09E-29 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 130 | 337 | 2.15E-40 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 16 | 117 | 2.7E-31 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 343 | 432 | 1.1E-20 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 118 | 135 | 1.1E-68 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 136 | 336 | 1.1E-68 | IPR027417 |
| Gene3D | G3DSA:1.10.3380.10 | - | 439 | 589 | 1.6E-33 | - |
| SMART | SM00490 | helicmild6 | 216 | 313 | 1.4E-12 | IPR001650 |
| SMART | SM00973 | Sec63_2 | 435 | 752 | 3.0E-49 | IPR004179 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 159 | 358 | 13.103197 | IPR001650 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G27730.1 | ATP binding;ATP-dependent helicases;DNA helicases. DNA helicase required for interference-sensitive meiotic crossover events. | 0 |
| RefSeq | XP_017255307.1 | PREDICTED: DExH-box ATP-dependent RNA helicase DExH17 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q5D892 | DExH-box ATP-dependent RNA helicase DExH17 OS=Arabidopsis thaliana OX=3702 GN=MER3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A161XE14 | DExH-box ATP-dependent RNA helicase DExH17 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021712 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.958325 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.342932 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.881108 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.021995 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.393215 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.562326 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.612367 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.482105 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.563348 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.544246 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.520227 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 2.615812 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.29564 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.356992 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.79913 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.442944 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.415209 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.311043 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.202712 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.274397 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.324551 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.050334 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.554045 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.132351 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.287645 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.498865 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.361823 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.666248 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.396237 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.62747 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.135744 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.030769 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.100702 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.414781 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.437976 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.377011 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 8.434959 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.18731 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.415886 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.236615 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.363164 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.887322 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.612445 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.388388 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg34978 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17001 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035312 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g023810 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21423, Sbi_jg22432 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16312 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016449 |
| Amaranthaceae | Suaeda glauca | 11 | Sgl62864, Sgl62865, Sgl62867, Sgl62871, Sgl62873, Sgl62906 ... |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000020046, gene:ENSEOMG00000050620 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1BG0019780, CQ.Regalona.r1.2AG0021500 |
| Apiaceae | Apium graveolens | 1 | Ag9G00461 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G011010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120103745 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2666.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G15993 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G27730.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003551m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g16840.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g007140.2N, BniB07g047820.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1858 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1938 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g18880 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0006s00019.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g34300 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.324 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027856 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G22475, Lb4G25190 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.2621, BH07.2433, CH07.2502 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2BG0193160 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0378290.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_068091 |
| Poaceae | Oryza coarctata | 4 | Oco03G015380, Oco04G016020, Oco12G006860, Oco18G001190 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G198100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102655, Pt_Chr0107913 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G015500, Chr15G009160 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G307400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG018550, gene_TRIDC4BG030700 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G136200.1, TraesCS4B02G168700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb184840_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-9475, nbis-gene-9476 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13901 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.Contig33.4 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g38670 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1906 |
| Rhizophoraceae | Carallia pectinifolia | 8 | nbisL1-mrna-2353, nbisL1-mrna-2360, nbisL1-mrna-2363 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12371 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3075 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.76 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001796, Maker00002279 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12048 |
| Salicaceae | Populus euphratica | 1 | populus_peu01053 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132624766 |
| Solanaceae | Solanum chilense | 1 | SOLCI001040600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107010152 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13837 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3595 |
| Zosteraceae | Zostera marina | 1 | Zosma03g20620.v3.1 |