Basic Information
Locus ID:
Ag9G00456
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
UBA-like domain (DUF1421)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 21253790 | 21257766 | - | Ag9G00456 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 58,517.92 Da | 68.77 | 64.82 | -0.93 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07223 | UBA-like domain (DUF1421) | 476 | 520 | 1.8E-21 | IPR010820 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 261 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 323 | - | - |
| Coils | Coil | Coil | 160 | 194 | - | - |
| Coils | Coil | Coil | 114 | 148 | - | - |
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01560.1 | Protein of unknown function (DUF1421). | 0 |
| RefSeq | XP_017259077.1 | PREDICTED: activating signal cointegrator 1 complex subunit 2 homolog [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A161YDT4 | DUF1421 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021716 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 64.809082 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 41.298275 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 55.658569 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 53.926723 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 45.485504 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 62.789173 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 61.469265 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 83.668884 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 30.28912 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 36.04707 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 33.136185 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 31.170605 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 32.54879 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 30.745333 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 26.959389 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 31.279682 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 24.826181 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 36.360649 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 29.695871 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 44.824818 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 40.52261 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 37.190273 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 35.698318 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 36.71389 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 33.208824 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 34.682171 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 36.710442 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 31.217596 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 36.185261 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 14.642629 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 14.144431 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 12.575078 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 64.606483 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 33.239231 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 126.676239 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 32.123302 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 22.781923 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 24.698809 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 21.596573 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 35.915001 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 24.874069 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 96.166557 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 79.261421 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 23.712433 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 30.250162 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 61.031178 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 39.158241 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 25.183151 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 24.168814 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 21.702377 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg17772, jg17773, jg40389 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12710 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah007373, Ah007375, Ah026624 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18950, Sbi_jg37405 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5245 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019857 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl22481, Sgl27700 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009038, gene:ENSEOMG00000026548 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0016430, CQ.Regalona.r1.4BG0013680 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30022870, pistato.v30139690 |
| Apiaceae | Apium graveolens | 1 | Ag9G00456 |
| Arecaceae | Cocos nucifera | 6 | COCNU_05G004260, COCNU_05G010760, COCNU_13G000490 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103703781, gene-LOC103711568, gene-LOC103715926 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.367.V1.1, AsparagusV1_05.2964.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G24961 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G01560.1, AT5G14540.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020517m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g00490.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g024020.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1865 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1945 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno06g05390, gene.Cymno09g09920 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0234s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g02240 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.316, evm.TU.LG10.692 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024160 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G22465 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.505, AH05.1111, BH02.524, BH05.1375, CH02.571 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0011270, gene-QOZ80_1BG0059870 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0026430.1, HORVU.MOREX.r3.3HG0233830.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_009825, gene-QYE76_049958, gene-QYE76_049967 |
| Poaceae | Oryza coarctata | 4 | Oco01G002780, Oco02G002820, Oco09G003280, Oco10G003230 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g07520.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G050400 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0200405, Pt_Chr0207408, Pt_Chr0501688, Pt_Chr0501737 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr02G019530, Chr03G004990, Chr05G010580, Chr08G000130 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G211300, Tel3E01G162600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG014250, gene_TRIDC1BG019920 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G113700.1, TraesCS1B02G134000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb122990_P001, Zm00001eb336590_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-13119, nbis-gene-18103, nbis-gene-23537 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g10028, Zma_g26514, Zma_g7675 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2174, evm.TU.LG14.1365 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g20450, gene.Posoc04g00660 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_4_RagTag.447, evm.TU.Scaffold_6_RagTag.147 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14964, nbisL1-mrna-28915 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1557, nbisL1-mrna-634 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-122, nbisL1-mrna-1881 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.286, evm.TU.utg000011l.103 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000094, Maker00007171 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11870, nbisL1-mrna-14619 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1439, nbisL1-mrna-17449 |
| Salicaceae | Populus euphratica | 3 | populus_peu01048, populus_peu28688, populus_peu30116 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621309 |
| Solanaceae | Solanum chilense | 2 | SOLCI002260400, SOLCI005663200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007591, gene-LOC107011549 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.25547_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0989 |
| Zosteraceae | Zostera marina | 2 | Zosma06g00910.v3.1, Zosma06g06250.v3.1 |