Basic Information
Locus ID:
Ag9G00455
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Denticleless protein homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 21245817 | 21249719 | + | Ag9G00455 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.67 | 56,586.46 Da | 52.24 | 78.69 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 357 | 391 | 3.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 141 | 179 | 5.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 101 | 136 | 0.003 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 57 | 401 | 7.33E-50 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 38 | 189 | 6.0E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 205 | 418 | 2.0E-25 | IPR015943 |
| SMART | SM00320 | WD40_4 | 38 | 81 | 280.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 139 | 179 | 2.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 266 | 301 | 5.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 351 | 391 | 4.9E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 306 | 347 | 20.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 97 | 136 | 1.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 208 | 248 | 1.5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 104 | 145 | 12.74747 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 104 | 136 | 10.126507 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 358 | 400 | 13.649761 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 146 | 181 | 9.836508 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 146 | 181 | 11.778342 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 358 | 394 | 11.022865 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 378 | 392 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 166 | 180 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 378 | 392 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 123 | 137 | 1.3E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 463 | 497 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 473 | 497 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G27640.2 | - | 0 |
| RefSeq | XP_017256996.1 | PREDICTED: denticleless protein homolog [Daucus carota subsp. sativus] | 0 |
| Q5ZJW8 | Denticleless protein homolog OS=Gallus gallus OX=9031 GN=DTL PE=2 SV=1 | 0 | |
| TrEMBL | A0A164VVF9 | Denticleless protein homolog OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021718 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.610755 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.506957 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.209433 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.350745 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.143178 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.110775 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 15.814488 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 15.808705 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 17.074743 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 15.039921 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 10.25195 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 11.583164 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.053397 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.181369 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.06339 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.69261 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.679152 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.311842 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.224714 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.31382 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 4.422553 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 6.069582 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.515891 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.632826 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 2.303038 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.404107 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 2.087797 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.403671 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.194348 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.216163 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 9.169882 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.260109 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.032866 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.092806 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.070842 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.11873 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.128395 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.077166 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.106498 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.361116 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.471989 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.361745 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 8.456961 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 7.532976 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 7.20935 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg40392 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7226 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah008880 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g088900 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18296, Sbi_jg36681 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4635 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017454 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl23445, Sgl23563, Sgl28571, Sgl28746, Sgl45436, Sgl50221 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000030889, gene:ENSEOMG00000042814 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0023360 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30022940 |
| Apiaceae | Apium graveolens | 2 | Ag7G01965, Ag9G00455 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G007750 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706899 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.369.V1.1, AsparagusV1_03.922.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G18872 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G27640.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004025m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g16770.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g067860.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1952 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g08660 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0045s00003.v1.0, Dusal.0045s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g00430 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10326, nbisL1-mrna-6853 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.306 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024166 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G22455 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.943, BH01.1081, CH01.1126 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0220270, gene-QOZ80_3BG0265410 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0335740.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_062500, gene-QYE76_062703 |
| Poaceae | Oryza coarctata | 2 | Oco05G020960, Oco06G021730 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g49200.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G116000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0104829, Pt_Chr0104886 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G007690, Chr04G026410, Chr07G025380, Chr12G029710 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G070500, Tel6E01G666100 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4AG042900, gene_TRIDC4BG006070 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G276500.1, TraesCS4B02G037200.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb015370_P001, Zm00001eb053910_P001 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3017 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.498, evm.TU.LG09.1742 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g03320 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1919 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-2400, nbisL1-mrna-2576 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17416 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3088 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.65 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001685 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12036 |
| Salicaceae | Populus euphratica | 2 | populus_peu01077, populus_peu01082 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132622194, gene-LOC132623745 |
| Solanaceae | Solanum chilense | 1 | SOLCI002260900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009248 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13839 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3579 |
| Zosteraceae | Zostera marina | 2 | Zosma06g06800.v3.1, Zosma07g04720.v3.1 |