Basic Information
Locus ID:
Ag9G00450
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 21121445 | 21123273 | + | Ag9G00450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.37 | 51,215.22 Da | 56.41 | 116.14 | 0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 5 | 41 | 1.9E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 48 | 3.53E-8 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 272 | 450 | 8.24E-17 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 52 | 326 | 1.02E-10 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 21 | 263 | 2.6E-18 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 264 | 461 | 3.7E-21 | IPR032675 |
| SMART | SM00256 | fbox_2 | 5 | 45 | 2.2E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 356 | 381 | 710.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 382 | 407 | 390.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 96 | 120 | 670.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 197 | 222 | 5.3 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 408 | 433 | 12.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 224 | 249 | 630.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40470.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_017254673.1 | PREDICTED: F-box/LRR-repeat protein 4 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A161XDX9 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021722 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.143858 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 9.372503 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.444736 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 7.745514 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 9.027696 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 8.968745 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 8.198526 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 6.476195 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 16.017332 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 17.925148 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 18.454277 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 11.578572 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 10.905883 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 12.050189 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.156978 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 5.564391 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 5.394083 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.673925 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.623397 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 8.315468 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 9.668102 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 9.141009 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 7.951434 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 9.454899 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.245148 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 13.203928 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.159507 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.002188 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 11.009167 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.696026 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.321725 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.963407 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 12.41437 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.037883 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 10.367619 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.874758 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.802255 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.699505 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.835294 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.685665 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.127792 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 10.128087 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 7.050195 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 8.888292 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 6.088505 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 8.653139 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 9.203297 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 8.187792 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 12.23917 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 8.791716 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg17768, jg40395 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24802 |
| Apiaceae | Apium graveolens | 1 | Ag9G00450 |
| Arecaceae | Cocos nucifera | 1 | scaffold012454G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103697634 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G30970 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G40470.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028043m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g01440.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g026230.2N, BniB02g026600.2N, BniB03g039930.2N |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g15710 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10329 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.301 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00017754, Pov_00024171 |
| Poaceae | Echinochloa crus-galli | 2 | BH09.2929, CH09.3140 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0682270, gene-QOZ80_9BG0707840 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0349780.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_064815 |
| Poaceae | Oryza coarctata | 1 | Oco22G005660 |
| Poaceae | Oryza sativa | 1 | ChrSy.fgenesh.mRNA.74 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G046600 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G007630, Chr17G006880 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G180300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG033330, gene_TRIDC4BG017500 |
| Poaceae | Zea mays | 1 | Zm00001eb246170_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-48788 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18734 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1832, evm.TU.LG11.1192 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g37970, gene.Posoc05g08110 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1925 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-2406, nbisL1-mrna-2571 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6771 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3092 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000019l.23 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002181 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21538 |
| Salicaceae | Populus euphratica | 2 | populus_peu05201, populus_peu38309 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622589 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107010292 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1613 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0952 |
| Zosteraceae | Zostera marina | 1 | Zosma05g15020.v3.1 |