Basic Information
Locus ID:
Ag9G00448
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Altered inheritance of mitochondria protein 32-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 20952060 | 20956738 | - | Ag9G00448 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 58,170.82 Da | 42.44 | 80.65 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03062 | TRX_Fd_Sucrase | 202 | 303 | 6.66517E-38 | IPR009737 |
| Pfam | PF06999 | Sucrase/ferredoxin-like | 95 | 301 | 1.3E-39 | IPR009737 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 203 | 303 | 1.11E-18 | IPR036249 |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 201 | 301 | 1.2E-22 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 371 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G27570.1 | Sucrase/ferredoxin-like family protein. | 0 |
| RefSeq | XP_017214737.1 | PREDICTED: uncharacterized protein LOC108192768 [Daucus carota subsp. sativus] | 0 |
| Q6FLQ5 | Altered inheritance of mitochondria protein 32 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=AIM32 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5B7AWJ7 | Altered inheritance of mitochondria protein 32-like OS=Davidia involucrata OX=16924 GN=Din_029809 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 52.979153 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 55.368893 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 46.155842 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 48.985878 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 50.070099 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 37.752972 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 33.08012 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 19.867895 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 70.273727 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 69.68985 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 69.214333 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 82.878365 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 87.75193 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 78.716034 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 35.66267 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 39.498299 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 30.637381 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 48.615791 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 41.427391 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 60.802979 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 67.411346 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 49.789597 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 56.895233 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 49.169495 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 47.632065 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 52.947586 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 39.06913 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 42.932117 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 46.988567 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 13.977243 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 19.676758 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 16.077312 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 33.653286 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 43.134495 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 34.134453 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 42.550194 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 27.846773 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 34.460884 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 37.521168 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 32.214848 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 34.065388 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 132.449936 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 97.336159 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 54.020218 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 49.74218 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 134.226288 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 38.322578 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 74.653999 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 79.646507 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 68.012207 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg19860, jg21618 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12114, gene_17499 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah009115, Ah037208 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g090910, BVRB_6g143910 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg18575, Sbi_jg36986, Sbi_jg42041, Sbi_jg48098 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg27459, Seu_jg4845 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00008882, GOSA_00017290 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl23607, Sgl28815, Sgl28817, Sgl31296, Sgl36632 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000003784, gene:ENSEOMG00000005425 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2BG0000440, CQ.Regalona.r1.6AG0011530 |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30023060, pistato.v30152670, pistato.v30153090 ... |
| Apiaceae | Apium graveolens | 2 | Ag9G00448, Ag9G01008 |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G006400, COCNU_01G006410, COCNU_11G011370 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702385, gene-LOC103712852 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.542.V1.1, AsparagusV1_05.1393.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G11250, Ftri18G03070 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT3G27570.1, AT4G26620.1, AT5G40510.1, AT5G55900.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10004412m.g.v1.0, Thhalv10015242m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp2g16740.v2.2, Sp6g17750.v2.2, Sp7g01370.v2.2 ... |
| Brassicaceae | Brassica nigra | 7 | BniB01g026070.2N, BniB02g034640.2N, BniB02g067760.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G1500, Ceq02G1881 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1663, Cgl02G1962 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g05970 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g26920 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-2268, nbisL1-mrna-7314 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.2053, evm.TU.LG05.292 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00004361, Pov_00027841 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G00856, Lb3G15734, Lb5G29231, Lb6G30764 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3286, BH07.3106, CH07.3172 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0143930, gene-QOZ80_2BG0199340 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0056160.1, HORVU.MOREX.r3.6HG0611040.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_025259 |
| Poaceae | Oryza coarctata | 2 | Oco03G020340, Oco04G021000 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g49320.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G259600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0106007, Pt_Chr0203583 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G003360, Chr09G021290, Chr10G019680, Chr11G002980 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G359900, Tel6E01G523200 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC1AG031690, gene_TRIDC1BG037090 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS1A02G210200.1, TraesCS1B02G224100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb189050_P001, Zm00001eb253200_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-8865 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14313 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.Contig9.3, evm.TU.LG09.1793, evm.TU.LG18.624 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g22270, gene.Posoc03g24030 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.Scaffold_3_RagTag.1930, evm.TU.Scaffold_6_RagTag.118 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-14936, nbisL1-mrna-19694, nbisL1-mrna-2410 ... |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-4018, nbisL1-mrna-555, nbisL1-mrna-623 ... |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-105, nbisL1-mrna-15048, nbisL1-mrna-22345 ... |
| Rhizophoraceae | Kandelia candel | 4 | evm.TU.utg000011l.86, evm.TU.utg000018l.32 ... |
| Rhizophoraceae | Kandelia obovata | 4 | Maker00002151, Maker00002893, Maker00007547, Maker00010546 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-11890, nbisL1-mrna-12029, nbisL1-mrna-7992 ... |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-17476, nbisL1-mrna-22581, nbisL1-mrna-23751 |
| Salicaceae | Populus euphratica | 3 | populus_peu00884, populus_peu01105, populus_peu38331 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132619247, gene-LOC132621364, gene-LOC132625225 |
| Solanaceae | Solanum chilense | 3 | SOLCI002307700, SOLCI003282200, SOLCI004254200 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107011040, gene-LOC107011451, gene-LOC107024118 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.6945_chr04_-, gene_14713 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3570, TC05G2589 |
| Zosteraceae | Zostera marina | 1 | Zosma04g17770.v3.1 |