halophFGD

Basic Information

Locus ID: Ag9G00444

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: (NAC) domain-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	20852080	20857679	-	Ag9G00444

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.72	58,297.97 Da	45.98	72.28	-0.65

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF02365	No apical meristem (NAM) protein	56	197	1.8E-21	IPR003441
SUPERFAMILY	SSF101941	NAC domain	41	216	1.02E-35	IPR036093
Gene3D	G3DSA:2.170.150.80	NAC domain	64	221	3.0E-29	IPR036093
ProSiteProfiles	PS51005	NAC domain profile.	55	216	30.183163	IPR003441

Gene Ontology

Biological Process:

GO:0006355 (regulation of DNA-templated transcription)

Molecular Function:

GO:0003677 (DNA binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G01600.1	NAC domain containing protein 44.
RefSeq	XP_017255605.1	PREDICTED: NAC domain-containing protein 8-like [Daucus carota subsp. sativus]
Swiss-Prot	Q6NQK2	SUPPRESSOR OF GAMMA RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=SOG1 PE=1 SV=1
TrEMBL	A0A164VV74	NAC domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021729 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	12.808595	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	8.013019	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	6.853754	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	7.255397	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	8.750442	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	6.488384	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	7.37415	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	5.012311	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	17.315702	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	18.504805	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	18.169556	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	17.829754	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	11.746416	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	11.222184	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	5.071461	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	3.266311	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	6.473657	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	5.738002	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	4.960257	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	7.118348	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	6.600646	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	11.445539	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	10.184352	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	12.416383	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	10.52319	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	6.677615	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	7.866902	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	7.34399	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	6.951803	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.709046		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	2.181135		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	1.869345		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	1.528012		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	4.142511		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	1.991675		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	1.842461		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.505194		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.044787		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	9.666959	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	2.835291	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.703588	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	5.964108	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	13.574034	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	5.458004	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	1.029858	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	4.799067	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	9.910725	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	9.421126	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	9.824567	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	8.508405	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg19865, jg30462, jg40402
Aizoaceae	Mesembryanthemum crystallinum	2	gene_17486, gene_3941
Amaranthaceae	Atriplex hortensis	2	Ah022760, Ah025939
Amaranthaceae	Beta vulgaris	1	BVRB_1g001950
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg12746, Sbi_jg3789, Sbi_jg49043, Sbi_jg53150 ... Sbi_jg53151
Amaranthaceae	Salicornia europaea	2	Seu_jg6191, Seu_jg8734
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00000680, GOSA_00018922
Amaranthaceae	Suaeda glauca	5	Sgl10795, Sgl16148, Sgl34124, Sgl34356, Sgl39757
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000001969, gene:ENSEOMG00000003651 ... gene:ENSEOMG00000014682, gene:ENSEOMG00000028036, gene:ENSEOMG00000034859, gene:ENSEOMG00000048924, gene:ENSEOMG00000051343
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0004250, CQ.Regalona.r1.2BG0027050 ... CQ.Regalona.r1.6AG0015190, CQ.Regalona.r1.6BG0016030
Anacardiaceae	Pistacia vera	2	pistato.v30023190, pistato.v30225750
Apiaceae	Apium graveolens	4	Ag4G00758, Ag5G02130, Ag9G00444, Ag9G01400
Arecaceae	Cocos nucifera	2	COCNU_02G013750, scaffold012839G000020
Arecaceae	Phoenix dactylifera	3	gene-LOC103695945, gene-LOC103715028, gene-LOC103723156
Asparagaceae	Asparagus officinalis	2	AsparagusV1_09.1627.V1.1, AsparagusV1_Unassigned.486.V1.1
Asteraceae	Flaveria trinervia	4	Ftri13G09490, Ftri17G23051, Ftri18G05143, Ftri6G19954
Brassicaceae	Arabidopsis thaliana	3	AT1G25580.1, AT3G01600.1, AT5G14490.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10007551m.g.v1.0, Thhalv10015728m.g.v1.0 ... Thhalv10022099m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g22630.v2.2, Sp3g00450.v2.2, Sp6g29520.v2.2
Brassicaceae	Brassica nigra	3	BniB04g040620.2N, BniB05g063400.2N, BniB08g006980.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq03G2032
Casuarinaceae	Casuarina glauca	1	Cgl03G2171
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno05g09760, gene.Cymno08g00930
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate06g16850, gene.Thate09g00580
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-11602, nbisL1-mrna-2270
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG03.501, evm.TU.LG05.277
Plantaginaceae	Plantago ovata	6	Pov_00000083, Pov_00019335, Pov_00024184, Pov_00024185 ... Pov_00027834, Pov_00027837
Plumbaginaceae	Limonium bicolor	2	Lb6G30208, Lb6G30633
Poaceae	Echinochloa crus-galli	15	AH01.4046, AH06.1110, AH07.2182, AH07.2450, AH07.3349 ... BH06.1137, BH07.2258, BH07.3172, BH09.1482, CH03.1787, CH06.1252, CH07.2329, CH07.3232, CH09.1583, CH09.1879
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_2AG0136070, gene-QOZ80_2BG0191600 ... gene-QOZ80_4AG0313520, gene-QOZ80_6AG0516650, gene-QOZ80_6BG0468340
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.2HG0175550.1, HORVU.MOREX.r3.2HG0175560.1 ... HORVU.MOREX.r3.3HG0305560.1, HORVU.MOREX.r3.7HG0670800.1
Poaceae	Lolium multiflorum	7	gene-QYE76_023415, gene-QYE76_023423, gene-QYE76_029357 ... gene-QYE76_044596, gene-QYE76_044597, gene-QYE76_044598, gene-QYE76_044601
Poaceae	Oryza coarctata	6	Oco03G014260, Oco04G014590, Oco07G008590, Oco08G008500 ... Oco11G007010, Oco12G007170
Poaceae	Oryza sativa	2	LOC_Os02g38130.1, LOC_Os04g40140.3
Poaceae	Paspalum vaginatum	6	gene-BS78_04G181400, gene-BS78_04G182400 ... gene-BS78_04G266500, gene-BS78_06G134500, gene-BS78_06G134800, gene-BS78_10G114100
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0204439, Pt_Chr0302354, Pt_Chr0302355, Pt_Chr0403605 ... Pt_Chr0404477
Poaceae	Sporobolus alterniflorus	8	Chr06G008550, Chr09G012730, Chr11G018130, Chr13G008600 ... Chr15G010110, Chr23G010560, Chr25G009100, Chr26G009180
Poaceae	Thinopyrum elongatum	4	Tel2E01G586500, Tel2E01G586700, Tel6E01G410200 ... Tel7E01G379800
Poaceae	Triticum dicoccoides	5	gene_TRIDC2BG051830, gene_TRIDC6AG032360 ... gene_TRIDC6BG038730, gene_TRIDC7AG026230, gene_TRIDC7BG016820
Poaceae	Triticum aestivum	13	TraesCS2A02G326300.2, TraesCS2A02G326400.1 ... TraesCS2B02G355400.1, TraesCS2B02G355500.1, TraesCS2B02G355600.1, TraesCS2B02G355700.1, TraesCS2D02G336500.1, TraesCS6A02G208900.3, TraesCS6B02G237900.3, TraesCS6D02G192400.1, TraesCS7A02G208200.1, TraesCS7B02G115400.1, TraesCS7D02G210600.1
Poaceae	Zea mays	6	Zm00001eb183700_P001, Zm00001eb246010_P001 ... Zm00001eb280480_P001, Zm00001eb280490_P001, Zm00001eb308090_P001, Zm00001eb424870_P002
Poaceae	Zoysia japonica	3	nbis-gene-18650, nbis-gene-29763, nbis-gene-50357
Poaceae	Zoysia macrostachya	5	Zma_g13806, Zma_g16601, Zma_g21461, Zma_g21462, Zma_g29478
Portulacaceae	Portulaca oleracea	5	evm.TU.LG03.80, evm.TU.LG04.1721, evm.TU.LG10.1209 ... evm.TU.LG13.620, evm.TU.LG21.310
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g21470, gene.Posoc05g02720
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_15_RagTag.117, evm.TU.Scaffold_17_RagTag.942 ... evm.TU.Scaffold_3_RagTag.1941
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-14932, nbisL1-mrna-23670, nbisL1-mrna-2418 ... nbisL1-mrna-2557
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-10143, nbisL1-mrna-10144, nbisL1-mrna-15918 ... nbisL1-mrna-620
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-101, nbisL1-mrna-17449, nbisL1-mrna-21924 ... nbisL1-mrna-3103
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000001l.69, evm.TU.utg000011l.82 ... evm.TU.utg000013l.528, evm.TU.utg000019l.53
Rhizophoraceae	Kandelia obovata	3	Maker00002105, Maker00004387, Maker00004695
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-10921, nbisL1-mrna-11653, nbisL1-mrna-11893 ... nbisL1-mrna-12023
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-23119, nbisL1-mrna-2819
Salicaceae	Populus euphratica	4	populus_peu01111, populus_peu07024, populus_peu07025 ... populus_peu20982
Solanaceae	Lycium barbarum	2	gene-LOC132621296, gene-LOC132641826
Solanaceae	Solanum chilense	2	SOLCI002192300, SOLCI003282700
Solanaceae	Solanum pennellii	2	gene-LOC107009331, gene-LOC107018601
Tamaricaceae	Reaumuria soongarica	1	gene_1608
Tamaricaceae	Tamarix chinensis	3	TC01G2119, TC03G1326, TC04G0246
Zosteraceae	Zostera marina	1	Zosma03g28530.v3.1