Basic Information
Locus ID:
Ag9G00410
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 19658869 | 19679217 | - | Ag9G00410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 55,844.39 Da | 44.81 | 85.58 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01593 | Flavin containing amine oxidoreductase | 23 | 489 | 9.9E-78 | IPR002937 |
| SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 14 | 493 | 8.2E-46 | IPR036188 |
| SUPERFAMILY | SSF54373 | FAD-linked reductases, C-terminal domain | 330 | 440 | 4.58E-32 | - |
| Gene3D | G3DSA:3.50.50.60 | - | 15 | 486 | 1.5E-153 | IPR036188 |
| Gene3D | G3DSA:1.10.3110.10 | protoporphyrinogen ix oxidase, domain 3 | 109 | 213 | 1.5E-153 | - |
| Gene3D | G3DSA:3.90.660.20 | Protoporphyrinogen oxidase, mitochondrial; domain 2 | 51 | 441 | 1.5E-153 | - |
| TIGRFAM | TIGR00562 | proto_IX_ox: protoporphyrinogen oxidase | 14 | 494 | 3.9E-76 | IPR004572 |
| PRINTS | PR00419 | Adrenodoxin reductase family signature | 38 | 51 | 6.1E-6 | - |
| PRINTS | PR00419 | Adrenodoxin reductase family signature | 15 | 37 | 6.1E-6 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14220.1 | Flavin containing amine oxidoreductase family. Encodes PPO2, a putative protoporphyrinogen oxidase based on sequence homology. Also known as MEE61 (maternal effect embryo arrest 61). mee61 mutant shows arrested endosperm development. | 0 |
| RefSeq | XP_017214837.1 | PREDICTED: protoporphyrinogen oxidase, mitochondrial isoform X1 [Daucus carota subsp. sativus] | 0 |
| O24164 | Protoporphyrinogen oxidase, mitochondrial OS=Nicotiana tabacum OX=4097 GN=PPXII PE=1 SV=1 | 0 | |
| TrEMBL | A0A164VUD0 | Protoporphyrinogen oxidase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021768 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 15.732388 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 12.49864 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 14.454379 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 13.991988 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 14.33134 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 11.369595 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 16.93845 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 14.942687 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 22.991236 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 23.597559 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 28.353598 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 26.008413 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 25.241611 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 17.909645 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 9.957967 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 16.020294 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 15.542737 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 21.178055 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 23.642458 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 17.631376 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 19.307652 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 25.041002 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 23.242985 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 26.023499 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 21.931927 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 24.581936 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 22.680485 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 17.818665 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 23.351891 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 7.229542 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 9.636333 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 7.740683 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.547292 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.917933 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 6.061114 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 6.680267 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.860754 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 4.697471 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 15.40011 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 10.727589 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 9.377563 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 65.459099 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 140.764191 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 47.915493 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 37.561714 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 50.516029 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 37.123276 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 21.163303 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 24.603502 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 22.349834 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg40453 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17450 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah033120 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19902, Sbi_jg44619 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17335 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl65810, Sgl65842, Sgl70152 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015801, gene:ENSEOMG00000022043 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0008220, CQ.Regalona.r1.2BG0009700 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30024350 |
| Apiaceae | Apium graveolens | 1 | Ag9G00410 |
| Arecaceae | Cocos nucifera | 1 | scaffold003417G000080 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702932 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.847.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G09882 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G14220.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013706m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g29810.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g048440.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0187 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0128 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g02950 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g18390 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.168 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024256 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G15062 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1388, BH09.1574, CH09.1692 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0312740, gene-QOZ80_4BG0343880 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0177420.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_044869 |
| Poaceae | Oryza coarctata | 2 | Oco07G009280, Oco08G009140 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g41260.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G142700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0307183 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr23G010050, Chr25G009610, Chr26G009600, Chr26G009720 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G605000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG050290, gene_TRIDC2BG053550 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G347900.1, TraesCS2B02G366300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb078900_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-36941 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19954 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1297, evm.TU.LG25.27 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g15050 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.47 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14845 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17632 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-44 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.31 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007479 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11945 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17546 |
| Salicaceae | Populus euphratica | 1 | populus_peu01209 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616532 |
| Solanaceae | Solanum chilense | 1 | SOLCI004109600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015145 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_275 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1021 |
| Zosteraceae | Zostera marina | 1 | Zosma05g07110.v3.1 |