Basic Information
Locus ID:
Ag9G00359
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Tubby-like F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 15606338 | 15610797 | + | Ag9G00359 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.52 | 48,038.45 Da | 60.59 | 75.45 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 52 | 105 | 1.8E-11 | IPR001810 |
| Pfam | PF01167 | Tub family | 116 | 424 | 4.2E-117 | IPR000007 |
| SUPERFAMILY | SSF81383 | F-box domain | 49 | 97 | 4.84E-7 | IPR036047 |
| SUPERFAMILY | SSF54518 | Tubby C-terminal domain-like | 102 | 429 | 1.62E-102 | IPR025659 |
| Gene3D | G3DSA:3.20.90.10 | Tubby Protein; Chain A | 112 | 423 | 3.1E-99 | IPR025659 |
| Gene3D | G3DSA:1.20.1280.50 | - | 48 | 101 | 8.6E-6 | - |
| ProSitePatterns | PS01200 | Tub family signature 1. | 350 | 363 | - | IPR018066 |
| ProSitePatterns | PS01201 | Tub family signature 2. | 414 | 429 | - | IPR018066 |
| PRINTS | PR01573 | Tubby superfamily signature | 169 | 185 | 1.0E-79 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 332 | 349 | 1.0E-79 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 185 | 209 | 1.0E-79 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 350 | 366 | 1.0E-79 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 235 | 262 | 1.0E-79 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 386 | 405 | 1.0E-79 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 407 | 429 | 1.0E-79 | IPR000007 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G25280.1 | tubby like protein 10. Member of TLP family | 0 |
| RefSeq | XP_017257607.1 | PREDICTED: tubby-like F-box protein 8 [Daucus carota subsp. sativus] | 0 |
| Q75HX5 | Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica OX=39947 GN=TULP8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J5B1E4 | Tubby-like F-box protein OS=Nyssa sinensis OX=561372 GN=F0562_028987 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 39.668797 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 46.101841 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 44.076229 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 49.919323 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 52.313969 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 43.833786 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 38.046726 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 35.092361 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 104.955605 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 105.898689 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 105.938347 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 93.234802 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 91.754196 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 83.794495 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 66.13131 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 59.308235 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 64.556534 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 57.174995 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 54.517208 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 66.083328 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 60.1763 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 86.932121 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 86.877625 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 73.322632 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 74.569824 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 66.130722 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 64.723946 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 56.262829 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 60.919411 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 42.694683 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 35.10133 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 34.912201 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 103.811462 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 77.635887 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 109.974892 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 110.449287 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 58.786674 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 76.370667 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 47.137249 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 49.945957 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 30.949013 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 79.443039 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 63.723438 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 56.868153 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 62.11235 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 59.324745 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 72.688942 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 88.277824 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 82.681107 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 70.773262 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology