Basic Information
Locus ID:
Ag9G00354
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 15451985 | 15453703 | - | Ag9G00354 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.48 | 51,448.57 Da | 53.08 | 69.20 | -0.72 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_028054314.1 | uncharacterized protein LOC114258543 isoform X2 [Camellia sinensis] | 0 |
| TrEMBL | A0A164VSW6 | PHD domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021830 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 17.312553 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 16.781635 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 19.450602 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 22.004122 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 22.200552 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 28.645323 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 26.672056 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 28.181875 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 24.98863 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 24.989088 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 26.020069 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 31.4224 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 29.659288 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 29.478716 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 9.924518 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 10.946694 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 9.537983 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 11.947076 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 9.945394 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 10.501296 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 8.522346 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 14.34543 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 13.030711 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 12.73336 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 10.925961 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 10.778594 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 11.622838 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 9.627467 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 11.057028 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 18.120535 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 14.352405 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 16.159288 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 33.445103 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 22.610672 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 35.921478 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 21.193413 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 18.344961 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 19.778547 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 14.585478 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 12.541465 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 9.098798 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 16.435766 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 14.178391 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 24.597925 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 24.315638 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 16.050266 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 19.276112 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 13.302608 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 14.489824 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 13.862881 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg30119 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10310 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g078210 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17700, Sbi_jg62373 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg942 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007284, GOSA_00007285 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23983, Sgl29162 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000011162, gene:ENSEOMG00000040978 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0005800, CQ.Regalona.r1.4BG0005910 |
| Apiaceae | Apium graveolens | 1 | Ag9G00354 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G001450 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701193 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.761.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G25363 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0717 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0768 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g01050 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g18800 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11038 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.1170 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002068 |
| Poaceae | Echinochloa crus-galli | 3 | BH06.1522, BH06.1530, CH06.1677 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0520770, gene-QOZ80_6BG0473280 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0677520.1.CDS1 |
| Poaceae | Oryza coarctata | 1 | Oco11G009160 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g27370.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G077300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0404002 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G016030, Chr14G006570, Chr21G006610 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G422900 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7AG030430 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G236100.1.cds1, TraesCS7B02G134100.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb382360_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-43824 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31881 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1473, evm.TU.LG20.406 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g21060 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1578 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18966 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000009l.118 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005929 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17828 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21833 |
| Salicaceae | Populus euphratica | 2 | populus_peu27979, populus_peu29422 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132598751 |
| Solanaceae | Solanum chilense | 1 | SOLCI000670400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021206 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.32121_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1495 |
| Zosteraceae | Zostera marina | 1 | Zosma04g23950.v3.1 |