Basic Information
Locus ID:
Ag9G00341
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Rae1-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 14382292 | 14389879 | + | Ag9G00341 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 38,261.70 Da | 38.38 | 66.76 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 23 | 49 | 3.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 232 | 271 | 0.022 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 110 | 139 | 2.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 67 | 96 | 0.014 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 19 | 305 | 5.13E-52 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 340 | 1.8E-112 | IPR015943 |
| SMART | SM00320 | WD40_4 | 11 | 50 | 1.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 227 | 271 | 0.0014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 58 | 97 | 0.0077 | IPR001680 |
| SMART | SM00320 | WD40_4 | 100 | 139 | 3.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 183 | 222 | 370.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 65 | 106 | 11.043142 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 107 | 148 | 14.585471 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 18 | 51 | 9.97376 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 246 | 280 | 9.806668 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 65 | 96 | 8.861059 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 107 | 141 | 11.365591 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 37 | 51 | 1.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 126 | 140 | 1.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 258 | 272 | 1.2E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80670.1 | Transducin/WD40 repeat-like superfamily protein. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_017255238.1 | PREDICTED: protein RAE1 [Daucus carota subsp. sativus] | 0 |
| Q38942 | Protein RAE1 OS=Arabidopsis thaliana OX=3702 GN=RAE1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A161XDM1 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021842 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 21.521666 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 16.338757 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 13.188374 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 13.250732 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 13.916382 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 9.587878 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.367813 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.716925 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 30.699808 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 30.505587 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 32.995331 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 33.847515 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 31.900002 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 32.247154 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 13.046185 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 18.595249 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 20.946047 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 18.217003 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 18.735485 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 15.987764 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 16.95866 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 26.089804 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 29.441114 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 37.270721 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 27.516018 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 24.26561 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 19.861767 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 18.860092 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 19.930029 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.016883 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.903196 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.267675 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 9.774473 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 22.494118 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 10.110514 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 10.32829 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.840464 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 4.406615 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 17.028368 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 9.817107 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 7.580908 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 11.53419 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 10.493942 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 9.757417 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 6.565095 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 13.644464 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 11.207588 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 56.322205 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 58.794094 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 50.738091 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg26321, jg28460 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_11135, gene_21440 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015866 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_8g190280, BVRB_9g223300 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg11660, Sbi_jg25289, Sbi_jg46739, Sbi_jg9138 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg19453, Seu_jg20915 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005106, GOSA_00011207 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl42966, Sgl43005, Sgl47774, Sgl47828, Sgl56005, Sgl60563 ... |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000010886, gene:ENSEOMG00000017435 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0013070, CQ.Regalona.r1.8BG0014650 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30129700 |
| Apiaceae | Apium graveolens | 2 | Ag6G02797, Ag9G00341 |
| Arecaceae | Cocos nucifera | 2 | COCNU_13G002680, scaffold017705G000040 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103715233, gene-LOC103717773 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.141.V1.1, AsparagusV1_03.143.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G22018, Ftri15G19742 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G15850.1, AT1G80670.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018796m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g35090.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB05g075410.2N, BniB06g051360.2N, BniB06g068290.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0381, Ceq03G0090 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0401, Cgl03G0097 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g01940 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0889s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g10870 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-694 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.700, evm.TU.LG08.1140 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002079 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16955 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.2452, AH08.471, BH02.2562, BH08.491, CH02.2744 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1BG0076300, gene-QOZ80_8AG0619210 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0005400.1, HORVU.MOREX.r3.3HG0274320.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_032839, gene-QYE76_032871 |
| Poaceae | Oryza coarctata | 3 | Oco02G015670, Oco15G003220, Oco16G003210 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g44394.1, LOC_Os08g07960.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G205800, gene-BS78_07G063000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0402412, Pt_Chr0600883 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr05G019110, Chr08G012000, Chr16G002060, Chr17G001890 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G071800, Tel3E01G391800 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC1AG003480, gene_TRIDC1BG004350 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G033000.1, TraesCS1B02G041300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb158970_P001, Zm00001eb412490_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-48501, nbis-gene-50591 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g22557, Zma_g23696 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.2623, evm.TU.LG08.210, evm.TU.LG08.985 ... |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc02g29140, gene.Posoc06g05560, gene.Posoc08g05760 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.266 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-28271, nbisL1-mrna-28310 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6176 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7768 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000023l.242 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018771 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13322, nbisL1-mrna-23426 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17211 |
| Salicaceae | Populus euphratica | 2 | populus_peu04080, populus_peu34912 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132606407, gene-LOC132619678 |
| Solanaceae | Solanum chilense | 1 | SOLCI003047700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031940 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_10972, gene_6920 |
| Tamaricaceae | Tamarix chinensis | 2 | TC07G0145, TC08G2303 |
| Zosteraceae | Zostera marina | 1 | Zosma05g26500.v3.1 |