Basic Information
Locus ID:
Ag9G00339
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Kelch motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 14256503 | 14261143 | + | Ag9G00339 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 51,923.86 Da | 44.24 | 88.63 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 43 | 80 | 9.1E-6 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 171 | 216 | 1.9E-12 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 219 | 267 | 4.3E-12 | IPR006652 |
| SUPERFAMILY | SSF81383 | F-box domain | 41 | 111 | 3.27E-7 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 96 | 385 | 9.55E-41 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 41 | 95 | 1.2E-5 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 109 | 387 | 6.4E-34 | IPR015915 |
| SMART | SM00256 | fbox_2 | 46 | 86 | 6.5E-6 | IPR001810 |
| SMART | SM00612 | kelc_smart | 183 | 229 | 6.3E-9 | IPR006652 |
| SMART | SM00612 | kelc_smart | 230 | 280 | 0.012 | IPR006652 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 40 | 86 | 10.424773 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G22040.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_017215017.1 | PREDICTED: F-box/kelch-repeat protein At1g22040 [Daucus carota subsp. sativus] | 0 |
| Q9LM55 | F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana OX=3702 GN=At1g22040 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164VSJ4 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021844 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 48.376152 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 57.20293 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 43.418858 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 50.193562 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 50.089104 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 46.859802 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 43.314842 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 30.438589 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 57.356186 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 59.881252 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 63.900547 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 61.340549 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 54.570114 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 53.033703 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 35.645889 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 34.750042 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 38.119423 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 49.389946 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 38.016453 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 62.347252 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 73.456306 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 40.47525 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 45.131248 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 42.1068 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 42.405209 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 48.738293 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 43.683559 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 42.91658 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 45.679531 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 12.494457 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 17.180071 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 15.002127 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 48.254047 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 36.457115 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 47.949886 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 44.654816 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 24.820496 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 31.064751 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 38.490173 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 47.913933 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 29.816458 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 132.551041 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 68.01545 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 64.950996 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 61.783588 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 134.804535 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 57.307938 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 32.020164 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 31.254528 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 33.4683 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg28461, jg30131 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21478 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009268 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g222660 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg41458, Sbi_jg48761 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27943 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005043 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl55360, Sgl60707, Sgl61219 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019790, gene:ENSEOMG00000039938 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0000580, CQ.Regalona.r1.9AG0023890 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30101850 |
| Apiaceae | Apium graveolens | 1 | Ag9G00339 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G006530, COCNU_05G006460 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103713316, gene-LOC120105101 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2639.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G22415 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G22040.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007536m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g19550.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g029920.2N, BniB03g029930.2N, BniB04g037210.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0649 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl09G0699, Cgl09G2154 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g10770 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g08500 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11036 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.1003, evm.TU.LG08.1137 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002081 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.2386, AH01.4948, BH01.2720, CH01.2900 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0121920, gene-QOZ80_2AG0134970 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0589440.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_023156 |
| Poaceae | Oryza coarctata | 3 | Oco04G013000, Oco19G002860, Oco20G002990 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g36520.1, LOC_Os10g21930.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G258800, gene-BS78_04G172800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0204263 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr09G007710, Chr09G013540, Chr13G009410, Chr13G017170 |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G398600, Tel7E01G045300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG069730, gene_TRIDC6AG030790 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS4A02G472100.1.cds1, TraesCS6B02G227500.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb173330_P001, Zm00001eb182900_P001 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13115, Zma_g16535 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG07.1874, evm.TU.LG08.1030, evm.TU.LG15.1283 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g23430 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1034, evm.TU.Scaffold_8_RagTag.705 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18808, nbisL1-mrna-9534 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19176, nbisL1-mrna-2144 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-18251, nbisL1-mrna-6855 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000002l.309, add.evm.TU.utg000018l.209 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003009, Maker00010634 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17889, nbisL1-mrna-20019 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20345, nbisL1-mrna-9909 |
| Salicaceae | Populus euphratica | 2 | populus_peu14659, populus_peu32323 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132598765 |
| Solanaceae | Solanum chilense | 1 | SOLCI005218600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005039 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3662 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1323 |
| Zosteraceae | Zostera marina | 1 | Zosma01g29750.v3.1 |