Basic Information
Locus ID:
Ag9G00337
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the plant LTP family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 14249604 | 14253347 | + | Ag9G00337 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.15 | 17,900.72 Da | 41.48 | 88.77 | 0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00010 | AAI_LTSS | 41 | 104 | 3.10527E-14 | - |
| Pfam | PF14368 | Probable lipid transfer | 19 | 112 | 1.3E-14 | IPR016140 |
| SUPERFAMILY | SSF47699 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin | 31 | 116 | 1.44E-20 | IPR036312 |
| Gene3D | G3DSA:1.10.110.10 | - | 32 | 109 | 6.6E-16 | IPR036312 |
| SMART | SM00499 | aai_6 | 34 | 112 | 3.9E-10 | IPR016140 |
| PRINTS | PR00382 | Plant phospholipid transfer protein signature | 33 | 49 | 9.6E-7 | IPR000528 |
| PRINTS | PR00382 | Plant phospholipid transfer protein signature | 89 | 106 | 9.6E-7 | IPR000528 |
| PRINTS | PR00382 | Plant phospholipid transfer protein signature | 56 | 70 | 9.6E-7 | IPR000528 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G64080.2 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein. | 0 |
| RefSeq | XP_017255543.1 | PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 isoform X2 [Daucus carota subsp. sativus] | 0 |
| Q8VYI9 | Non-specific lipid transfer protein GPI-anchored 31 OS=Arabidopsis thaliana OX=3702 GN=LTPG31 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164VSI5 | AAI domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021847 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 16.934448 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 8.225682 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.293792 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 8.692959 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 10.668942 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.451678 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.915226 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.131343 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 114.461243 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 108.950592 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 104.194687 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 95.351753 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 134.191589 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 134.617126 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 183.458099 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 118.949539 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 161.473633 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 177.256256 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 162.409348 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 171.276947 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 136.05426 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 427.796143 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 424.581268 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 427.424347 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 299.913239 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 134.453522 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 162.745438 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 128.409225 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 186.94165 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.64727 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.484314 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 8.311606 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 23.613939 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 194.682343 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 18.845713 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 8.765574 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 21.017656 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 16.426382 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 27.513781 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.868796 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.475473 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.219138 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 17.738293 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 3.501813 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 11.181073 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 4.519673 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 19.235451 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 345.532806 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 314.961426 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 320.121338 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg11424, jg26324, jg28463, jg30133, jg37857, jg6100 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10124, gene_9470 |
| Amaranthaceae | Atriplex hortensis | 6 | Ah015859, Ah015862, Ah024591, Ah024642, Ah024848, Ah037102 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g190310 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25292, Sbi_jg9141 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19451 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011205 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl43003, Sgl47777, Sgl47824 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000009683, gene:ENSEOMG00000013190 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0016250, CQ.Regalona.r1.1BG0009430 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30040670, pistato.v30102160 |
| Apiaceae | Apium graveolens | 2 | Ag4G02721, Ag9G00337 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G007320, COCNU_03G006580, COCNU_03G006590 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103701737, gene-LOC103717216, gene-LOC103721068 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1777.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G04673 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT2G13820.1, AT4G08670.1, AT5G09370.1, AT5G64080.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10002896m.g.v1.0, Thhalv10003117m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g27150.v2.2, Sp6g33960.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g011490.2N, BniB04g001570.2N, BniB05g027440.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0653 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0704 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno03g11910, gene.Cymno03g12040, gene.Cymno05g13840 |
| Hydrocharitaceae | Thalassia testudinum | 7 | gene.Thate01g16220, gene.Thate01g21670, gene.Thate03g04210 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11035, nbisL1-mrna-2110 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.1016, evm.TU.LG08.1181 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002086 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G22619 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4682, CH01.5256, Contig181.102 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0236990, gene-QOZ80_3BG0291060 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0400520.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_070191 |
| Poaceae | Oryza coarctata | 2 | Oco05G005160, Oco06G005330 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g09230.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G450900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0101495 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G026160, Chr12G013220 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G451000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG005330, gene_TRIDC4BG046280 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G038400.1, TraesCS4B02G267300.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb401230_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-2640 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1889 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.2629, evm.TU.LG08.1549, evm.TU.LG08.222 ... |
| Posidoniaceae | Posidonia oceanica | 4 | gene.Posoc01g23600, gene.Posoc02g28940, gene.Posoc02g28950 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1564 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-19116, nbisL1-mrna-2955, nbisL1-mrna-3644 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16472, nbisL1-mrna-2697 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18952 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000019l.305, evm.TU.utg000009l.374 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006017, Maker00012798 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2805 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21847 |
| Salicaceae | Populus euphratica | 5 | populus_peu02532, populus_peu14649, populus_peu32316 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598768, gene-LOC132622636 |
| Solanaceae | Solanum chilense | 1 | SOLCI005218300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008596 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9086 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0749 |
| Zosteraceae | Zostera marina | 2 | Zosma01g29820.v3.1, Zosma04g19850.v3.1 |