halophFGD

Basic Information

Locus ID: Ag9G00267

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	11642120	11652605	+	Ag9G00267

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.43	92,006.58 Da	57.52	91.56	-0.32

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd08771	DLP_1	52	324	1.02896E-134	IPR001401
Pfam	PF01031	Dynamin central region	247	530	4.2E-102	IPR000375
Pfam	PF02212	Dynamin GTPase effector domain	657	746	1.2E-26	IPR003130
Pfam	PF00350	Dynamin family	57	236	9.0E-54	IPR045063
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	31	331	2.97E-80	IPR027417
Gene3D	G3DSA:1.20.120.1240	Dynamin, middle domain	354	555	1.7E-69	-
Gene3D	G3DSA:1.20.120.1240	Dynamin, middle domain	616	727	4.7E-21	-
Gene3D	G3DSA:3.40.50.300	-	30	333	3.1E-117	IPR027417
SMART	SM00302	GED_2	656	747	2.9E-35	IPR003130
SMART	SM00053	dynamin_3	29	276	1.0E-119	IPR001401
ProSiteProfiles	PS51388	GED domain profile.	661	752	27.645391	IPR020850
ProSiteProfiles	PS51718	Dynamin-type guanine nucleotide-binding (G) domain profile.	51	324	58.634068	IPR030381
ProSitePatterns	PS00410	Dynamin-type guanine nucleotide-binding (G) domain signature.	80	89	-	IPR019762
PRINTS	PR00195	Dynamin signature	248	267	1.5E-56	IPR022812
PRINTS	PR00195	Dynamin signature	206	224	1.5E-56	IPR022812
PRINTS	PR00195	Dynamin signature	225	241	1.5E-56	IPR022812
PRINTS	PR00195	Dynamin signature	156	173	1.5E-56	IPR022812
PRINTS	PR00195	Dynamin signature	79	96	1.5E-56	IPR022812
PRINTS	PR00195	Dynamin signature	54	72	1.5E-56	IPR022812
MobiDBLite	mobidb-lite	consensus disorder prediction	575	595	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	787	806	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	23	-	-

Gene Ontology

Molecular Function:

GO:0003924 (GTPase activity) GO:0005525 (GTP binding)

KEGG Pathway

KO Term:

K17065 (dynamin 1-like protein [EC:3.6.5.5])

Pathway:

ko04139 (Mitophagy - yeast) map04139 (Mitophagy - yeast) ko04214 (Apoptosis - fly) map04214 (Apoptosis - fly) map04217 (Necroptosis) map04621 (NOD-like receptor signaling pathway) map04668 (TNF signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G33650.1	dynamin-related protein 3A. Encodes a protein with high sequence similarity to the dynamin superfamily. Among those members ADL2 was most closely related to Dnm1p of yeast and likely a member of the Vps1p subfamily. Widely expressed in various tissues with highest expression in flower tissues. Localizes to the chloroplast, mitochondrion and peroxisome. Involved in peroxisome and mitochondria fission in combination with DRP3B.
RefSeq	XP_017258231.1	PREDICTED: dynamin-related protein 3B-like [Daucus carota subsp. sativus]
Swiss-Prot	Q8S944	Dynamin-related protein 3A OS=Arabidopsis thaliana OX=3702 GN=DRP3A PE=1 SV=2
TrEMBL	A0A2R6Q6K2	Dynamin-related protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc06811 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	43.454716	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	36.574444	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	39.773399	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	41.665016	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	42.018497	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	41.107918	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	38.559868	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	42.091267	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	61.686665	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	58.903324	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	62.93655	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	65.309502	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	64.000824	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	54.829109	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	28.74408	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	38.818745	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	42.085545	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	41.897934	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	31.339706	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	44.806293	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	48.889545	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	40.228107	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	43.647175	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	43.746708	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	38.837482	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	49.731525	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	42.16592	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	38.166203	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	40.242764	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	42.485195		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	40.333725		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	35.281731		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	47.942093		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	47.136379		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	45.859711		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	35.109699		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	27.638988		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	36.341637		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	36.792618	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	26.114681	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	25.543524	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	93.246941	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	76.617256	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	64.890884	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	58.665741	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	92.224716	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	54.249912	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	54.867275	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	55.15556	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	50.706066	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg26358, jg30167
Aizoaceae	Mesembryanthemum crystallinum	2	gene_24151, gene_26319
Amaranthaceae	Atriplex hortensis	2	Ah009339, Ah027217
Amaranthaceae	Beta vulgaris	2	BVRB_6g134060, BVRB_9g221380
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg10780, Sbi_jg12603, Sbi_jg47519, Sbi_jg53336
Amaranthaceae	Salicornia europaea	2	Seu_jg21769, Seu_jg8587
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00010427, GOSA_00018715
Amaranthaceae	Suaeda glauca	6	Sgl33658, Sgl38970, Sgl65549, Sgl65619, Sgl69872, Sgl69915
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000001447, gene:ENSEOMG00000002501 ... gene:ENSEOMG00000012044, gene:ENSEOMG00000014604, gene:ENSEOMG00000026037, gene:ENSEOMG00000027209, gene:ENSEOMG00000037045, gene:ENSEOMG00000050661
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.6AG0023190, CQ.Regalona.r1.6BG0024510 ... CQ.Regalona.r1.7BG0001270, CQ.Regalona.r1.9AG0023200
Anacardiaceae	Pistacia vera	2	pistato.v30102360, pistato.v30251260
Apiaceae	Apium graveolens	4	Ag1G00670, Ag1G00671, Ag1G00675, Ag9G00267
Arecaceae	Cocos nucifera	3	COCNU_02G008760, COCNU_11G003050, COCNU_15G004760
Arecaceae	Phoenix dactylifera	2	gene-LOC103710572, gene-LOC103716152
Asparagaceae	Asparagus officinalis	3	AsparagusV1_02.448.V1.1, AsparagusV1_09.959.V1.1 ... AsparagusV1_10.496.V1.1
Asteraceae	Flaveria trinervia	1	FtriNA23159
Brassicaceae	Arabidopsis thaliana	2	AT2G14120.3, AT4G33650.2
Brassicaceae	Eutrema salsugineum	2	Thhalv10022566m.g.v1.0, Thhalv10024438m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g27480.v2.2, Sp7g31380.v2.2
Brassicaceae	Brassica nigra	3	BniB02g086410.2N, BniB03g009360.2N, BniB05g004450.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq03G2849, Ceq04G2497, Ceq04G2498, Ceq04G2499, Ceq09G0567
Casuarinaceae	Casuarina glauca	4	Cgl04G2725, Cgl04G2726, Cgl07G2100, Cgl09G0593
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno01g07420, gene.Cymno11g05250
Dunaliellaceae	Dunaliella salina	1	Dusal.0633s00006.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate03g11470, gene.Thate04g10470
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-3893
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG05.566, evm.TU.LG05.766
Plantaginaceae	Plantago ovata	3	Pov_00002165, Pov_00028749, Pov_00039734
Plumbaginaceae	Limonium bicolor	3	Lb3G18220, Lb4G21985, Lb8G35668
Poaceae	Echinochloa crus-galli	6	AH02.4334, AH09.771, BH02.4362, BH09.781, CH01.5311 ... CH02.4411
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_1AG0044610, gene-QOZ80_1BG0094610 ... gene-QOZ80_4AG0320830, gene-QOZ80_4BG0352210, gene-QOZ80_8BG0669540
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0161510.1, HORVU.MOREX.r3.3HG0310450.1
Poaceae	Lolium multiflorum	1	gene-QYE76_043560
Poaceae	Oryza coarctata	3	Oco01G028550, Oco02G029640, Oco08G003980
Poaceae	Oryza sativa	2	LOC_Os01g69130.1, LOC_Os04g31190.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G383000, gene-BS78_06G063700
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0303048, Pt_Chr0405907, Pt_Chr0600531, Pt_Chr0600539
Poaceae	Sporobolus alterniflorus	8	Chr02G002460, Chr03G022880, Chr05G031980, Chr08G019150 ... Chr23G015110, Chr25G012840, Chr26G004720, Chr30G012560
Poaceae	Thinopyrum elongatum	2	Tel2E01G503500, Tel3E01G680400
Poaceae	Triticum dicoccoides	3	gene_TRIDC2AG040650, gene_TRIDC2BG043660 ... gene_TRIDC3AG060590
Poaceae	Triticum aestivum	7	TraesCS2A02G281000.2, TraesCS2B02G298400.1 ... TraesCS2D02G279900.2, TraesCS3A02G428000.2, TraesCS3B02G465100.3, TraesCS3D02G423500.1, TraesCS5D02G082000.4
Poaceae	Zea mays	3	Zm00001eb085760_P005, Zm00001eb143240_P003 ... Zm00001eb364470_P001
Poaceae	Zoysia japonica	3	nbis-gene-10988, nbis-gene-28339, nbis-gene-7907
Poaceae	Zoysia macrostachya	3	Zma_g11820, Zma_g21141, Zma_g9270
Portulacaceae	Portulaca oleracea	4	evm.TU.LG05.298, evm.TU.LG08.1072, evm.TU.LG22.813 ... evm.TU.LG25.1014
Posidoniaceae	Posidonia oceanica	2	gene.Posoc03g13580, gene.Posoc04g11250
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_1_RagTag.1949, evm.TU.Scaffold_2_RagTag.487
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-5737
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-13629, nbisL1-mrna-2044
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-3576, nbisL1-mrna-9691
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000009l.671, evm.TU.utg000016l.305
Rhizophoraceae	Kandelia obovata	1	Maker00016490
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-2595, nbisL1-mrna-4867
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-13892, nbisL1-mrna-16562
Salicaceae	Populus euphratica	3	populus_peu22701, populus_peu24131, populus_peu37408
Solanaceae	Lycium barbarum	4	gene-LOC132598854, gene-LOC132609453, gene-LOC132609454 ... gene-LOC132643694
Solanaceae	Solanum chilense	4	SOLCI001249400, SOLCI004859400, SOLCI005038700 ... SOLCI007418400
Solanaceae	Solanum pennellii	3	gene-LOC107004619, gene-LOC107008072, gene-LOC107028925
Tamaricaceae	Reaumuria soongarica	5	STRG.20553_chr08_+, gene_12630, gene_16220, gene_2841 ... gene_9203
Tamaricaceae	Tamarix chinensis	4	TC10G0591, TC10G0596, TC11G0658, TC12G0612
Zosteraceae	Zostera marina	2	Zosma03g06250.v3.1, Zosma06g10030.v3.1