Basic Information
Locus ID:
Ag9G00197
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Receptor protein kinase-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 7174867 | 7178545 | - | Ag9G00197 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.57 | 83,982.86 Da | 40.87 | 91.31 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 470 | 766 | 1.01978E-84 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 30 | 69 | 2.4E-10 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 470 | 761 | 1.9E-30 | IPR000719 |
| Pfam | PF13516 | Leucine Rich repeat | 221 | 234 | 1.2 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 469 | 767 | 2.49E-52 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 33 | 287 | 5.35E-47 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 424 | 539 | 3.2E-16 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 540 | 771 | 1.1E-40 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 29 | 196 | 3.9E-42 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 197 | 292 | 7.9E-21 | IPR032675 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 464 | 767 | 25.827778 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 221 | 242 | 7.773561 | IPR001611 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34220.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_017256138.1 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Daucus carota subsp. sativus] | 0 |
| Q94C77 | Receptor protein kinase-like protein At4g34220 OS=Arabidopsis thaliana OX=3702 GN=At4g34220 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164VPA8 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021991 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.202254 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.942345 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.803185 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.649197 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 15.712991 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.937862 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.364205 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.18468 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 34.61499 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 35.40007 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 43.218681 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 32.74329 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 27.103828 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 24.502707 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.3299 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.212371 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.412004 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.021004 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3.916631 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 2.789866 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 3.957052 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 13.764834 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 18.160309 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 21.8589 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 17.702417 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 12.18646 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 12.077703 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.686389 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 16.027731 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.616058 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.557761 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.325204 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.127264 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.405528 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.058591 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.427782 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 42.136696 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 23.222757 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 9.849542 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.043392 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.155978 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.050529 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.690091 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.134822 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 5.985231 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 5.579623 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 3.945874 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg1112, jg28642, jg30680, jg39994 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_16710, gene_26528 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah010013, Ah027611 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g127460, BVRB_9g223890 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg11099, Sbi_jg13086, Sbi_jg46070, Sbi_jg52769 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg20420, Seu_jg9080 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005528, GOSA_00010174 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl33879, Sgl39251, Sgl55687, Sgl60905 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000001703, gene:ENSEOMG00000016223 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.6AG0025540, CQ.Regalona.r1.7BG0005550 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30106830, pistato.v30205700 |
| Apiaceae | Apium graveolens | 1 | Ag9G00197 |
| Arecaceae | Cocos nucifera | 2 | COCNU_11G007640, contig69653366G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103714255, gene-LOC103716219 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.3242.V1.1 |
| Asteraceae | Flaveria trinervia | 5 | Ftri13G24759, Ftri15G16133, Ftri18G22951, Ftri1G04342 ... |
| Brassicaceae | Arabidopsis thaliana | 5 | AT2G15300.1, AT2G23300.1, AT4G34220.1, AT4G37250.1 ... |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10000055m.g.v1.0, Thhalv10003700m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp2g29380.v2.2, Sp3g28580.v2.2, Sp4g02300.v2.2 ... |
| Brassicaceae | Brassica nigra | 5 | BniB01g020540.2N, BniB04g026890.2N, BniB05g001630.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq05G1359, Ceq09G0365 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G1364, Cgl09G0403 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g02560 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g00550 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-10056, nbisL1-mrna-10545, nbisL1-mrna-6650 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG02.2082, evm.TU.LG03.1036, evm.TU.LG08.528 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007661, Pov_00023861 |
| Plumbaginaceae | Limonium bicolor | 5 | Lb1G06363, Lb2G13584, Lb3G17451, Lb5G27310, Lb5G27839 |
| Poaceae | Echinochloa crus-galli | 6 | AH03.1206, AH06.2402, BH03.1395, BH06.2198, CH03.1511 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0524100, gene-QOZ80_6AG0545950 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0467840.1, HORVU.MOREX.r3.7HG0746230.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_003887, gene-QYE76_019894, gene-QYE76_036731 |
| Poaceae | Oryza coarctata | 4 | Oco11G013540, Oco12G013680, Oco17G000240, Oco18G000220 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G087500, gene-BS78_10G202300 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0401633, Pt_Chr0401656, Pt_Chr0705139 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G030620, Chr05G008370, Chr10G004700, Chr10G018660 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G274800, Tel7E01G912300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG026530, gene_TRIDC5BG027720 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G160500.1, TraesCS5B02G158000.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb095660_P001, Zm00001eb307320_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-24619, nbis-gene-24620, nbis-gene-40936 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g30866, Zma_g31972, Zma_g33117 |
| Portulacaceae | Portulaca oleracea | 8 | evm.TU.LG02.1517, evm.TU.LG04.1050, evm.TU.LG05.129 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g05260 |
| Rhizophoraceae | Bruguiera sexangula | 5 | evm.TU.60424.1, evm.TU.Scaffold_1_RagTag.2068 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-17303, nbisL1-mrna-4844, nbisL1-mrna-5876 ... |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-15142, nbisL1-mrna-20892, nbisL1-mrna-7755 ... |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-11937, nbisL1-mrna-3468, nbisL1-mrna-6109 ... |
| Rhizophoraceae | Kandelia candel | 4 | evm.TU.utg000009l.745, evm.TU.utg000011l.1121 ... |
| Rhizophoraceae | Kandelia obovata | 4 | Maker00006266, Maker00007721, Maker00012450, Maker00017030 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-15478, nbisL1-mrna-2519, nbisL1-mrna-4785 ... |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-14011, nbisL1-mrna-2194, nbisL1-mrna-3253 ... |
| Salicaceae | Populus euphratica | 3 | populus_peu01544, populus_peu14428, populus_peu23350 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598998, gene-LOC132622378 |
| Solanaceae | Solanum chilense | 2 | SOLCI004061300, SOLCI005941300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007771, gene-LOC107011791 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.11561_chr02_+, STRG.6522_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G1803, TC10G0337 |
| Zosteraceae | Zostera marina | 2 | Zosma03g23560.v3.1, Zosma05g19480.v3.1 |