Basic Information
Locus ID:
Ag9G00173
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
CYPRO4-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 6038046 | 6042421 | + | Ag9G00173 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 70,749.76 Da | 29.18 | 70.42 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08553 | VID27 C-terminal WD40-like domain | 265 | 582 | 3.1E-43 | IPR013863 |
| SUPERFAMILY | SSF101908 | Putative isomerase YbhE | 253 | 508 | 8.76E-12 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 189 | 585 | 5.0E-10 | IPR015943 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19240.1 | Vacuolar import/degradation, Vid27-related protein. | 0 |
| RefSeq | XP_017256148.1 | PREDICTED: protein CYPRO4 [Daucus carota subsp. sativus] | 0 |
| P40781 | Protein CYPRO4 OS=Cynara cardunculus OX=4265 GN=CYPRO4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164VNH0 | VID27 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022024 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 24.098619 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 15.589483 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 22.99579 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 23.683821 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 22.529362 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 23.677851 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 25.342527 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 23.877607 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 41.488758 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 57.164501 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 41.939442 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 36.829441 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 28.153898 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 25.20981 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 26.734936 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 37.918015 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 16.270016 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 24.604662 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 19.10364 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 43.413765 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 25.532101 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 36.965084 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 43.851192 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 45.649574 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 35.176022 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 26.031134 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 20.806772 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 23.691336 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 22.70631 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 6.763798 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 9.926655 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 8.855177 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 23.289988 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 20.212248 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 16.629972 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 12.059218 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 8.082583 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 8.683111 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 17.856382 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 12.35993 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.34511 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 48.61142 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 94.5588 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 36.546078 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 39.200214 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 47.751408 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 52.293213 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 32.211441 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 21.614328 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 17.914026 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg11973, jg22779, jg28679 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_14234, gene_18610 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010358 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g218480 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12527, Sbi_jg45787 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20144 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019710 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42009, Sgl46785 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014445, gene:ENSEOMG00000037978 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0008630, CQ.Regalona.r1.9AG0015810 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30045270, pistato.v30112810 |
| Apiaceae | Apium graveolens | 3 | Ag10G02547, Ag9G00173, AgUnG01155 |
| Arecaceae | Cocos nucifera | 2 | COCNU_11G009160, COCNU_11G012530 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103699412, gene-LOC103710471 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.2548.V1.1, AsparagusV1_07.754.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri18G02428, Ftri1G06158, Ftri3G29125 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G19240.1, AT4G33400.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10020256m.g.v1.0, Thhalv10024654m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g17320.v2.2, Sp7g31100.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g045030.2N, BniB01g059540.2N, BniB03g009510.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G2111, Ceq07G2150 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G2380 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g07630 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0317s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g10780 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1268, nbisL1-mrna-9431 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.437, evm.TU.LG08.7 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00007601 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37736, Lb3G17141 |
| Poaceae | Echinochloa crus-galli | 6 | AH07.3744, AH07.565, BH07.3567, BH07.696, CH07.3633 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0103590, gene-QOZ80_2AG0148560 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0569700.1, HORVU.MOREX.r3.6HG0622700.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_020952, gene-QYE76_026281 |
| Poaceae | Oryza coarctata | 4 | Oco03G003950, Oco03G023890, Oco04G003890, Oco04G024440 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g08190.1, LOC_Os02g54780.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G058600, gene-BS78_04G302600 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0202340, Pt_Chr0202940, Pt_Chr0202952 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr06G000660, Chr06G034080, Chr09G017980, Chr13G002160 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G310200, Tel6E01G622300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG020890, gene_TRIDC6AG052530 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS6A02G150500.1, TraesCS6A02G350000.2 ... |
| Poaceae | Zea mays | 3 | Zm00001eb192690_P001, Zm00001eb206560_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-33605, nbis-gene-44196, nbis-gene-57118 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g12299, Zma_g14597, Zma_g15053 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG02.468, evm.TU.LG08.1903, evm.TU.LG09.1709 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g13890, gene.Posoc03g20400 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_2_RagTag.312, evm.TU.Scaffold_8_RagTag.952 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-4877, nbisL1-mrna-8868 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14617, nbisL1-mrna-8188 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-20662, nbisL1-mrna-9826 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.766, evm.TU.utg000018l.300 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00002936, Maker00005502 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11425, nbisL1-mrna-2492 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-23828, nbisL1-mrna-6074 |
| Salicaceae | Populus euphratica | 3 | populus_peu09004, populus_peu31977, populus_peu36345 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132599052, gene-LOC132627866 |
| Solanaceae | Solanum chilense | 2 | SOLCI002762300, SOLCI006084800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107006728, gene-LOC107017657 |
| Tamaricaceae | Reaumuria soongarica | 3 | MSTRG.14294_chr08_-, gene_1227, gene_16810 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G2518, TC12G1112 |
| Zosteraceae | Zostera marina | 1 | Zosma03g06190.v3.1 |