Basic Information
Locus ID:
Ag9G00164
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Phosphotransferase enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 5788281 | 5794284 | + | Ag9G00164 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.61 | 73,748.09 Da | 47.39 | 81.87 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 333 | 594 | 1.31211E-97 | - |
| Pfam | PF19160 | SPARK | 29 | 174 | 2.0E-19 | IPR043891 |
| Pfam | PF00069 | Protein kinase domain | 332 | 592 | 2.6E-49 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 310 | 595 | 7.42E-80 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 403 | 615 | 1.0E-61 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 293 | 402 | 5.2E-31 | - |
| SMART | SM00220 | serkin_6 | 327 | 601 | 5.3E-35 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 327 | 605 | 38.124359 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 446 | 458 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 333 | 355 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19300.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017256143.1 | PREDICTED: probable receptor-like protein kinase At1g49730 [Daucus carota subsp. sativus] | 0 |
| Q9FX99 | Probable receptor-like protein kinase At1g49730 OS=Arabidopsis thaliana OX=3702 GN=At1g49730 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164VNP5 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022017 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.996276 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.32045 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.653538 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.976261 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.638866 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.285633 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.978532 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.197655 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 15.747769 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 16.060389 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 17.34926 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 17.316626 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 14.157627 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 13.422177 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 8.070195 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 9.368878 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 10.265043 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.120367 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 19.027113 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 9.667436 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 8.197263 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 7.764729 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 7.852808 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 9.513949 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 11.873552 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 11.091773 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 10.538594 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.412773 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 9.049043 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.808916 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.610778 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.542038 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.980281 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.591156 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.480862 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.279288 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.326315 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.228563 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.997042 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.316447 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.400035 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.669321 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 2.33812 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.560667 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.658306 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.906051 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.820061 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 11.34338 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 8.877034 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 10.475002 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28667 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26576 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009904 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g216070 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11167, Sbi_jg46141 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20481 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005470 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55728, Sgl60942 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000036787, gene:ENSEOMG00000051857 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0004880, CQ.Regalona.r1.9AG0019540 |
| Apiaceae | Apium graveolens | 1 | Ag9G00164 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G019200, COCNU_11G000230 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103701255, gene-LOC103710141, gene-LOC120112464 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.377.V1.1, AsparagusV1_09.855.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G31892, Ftri3G18440 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G49730.1, AT3G19300.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011356m.g.v1.0, Thhalv10020248m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g36620.v2.2, Sp3g17380.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g044960.2N, BniB04g060860.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G2131 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G2358 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno07g09130, gene.Cymno08g07750 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate05g13950, gene.Thate06g10110 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10998 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.489 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012328 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G00645, Lb4G21667 |
| Poaceae | Echinochloa crus-galli | 5 | AH09.2803, BH09.1083, BH09.3033, CH09.1219, CH09.3204 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_4AG0298440, gene-QOZ80_4AG0317490 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0168520.1, HORVU.MOREX.r3.2HG0215690.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_047674 |
| Poaceae | Oryza coarctata | 4 | Oco07G005920, Oco07G019940, Oco08G005920, Oco08G019300 |
| Poaceae | Oryza sativa | 2 | LOC_Os04g35114.1, LOC_Os04g59320.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_06G095900, gene-BS78_06G293600 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0302685, Pt_Chr0302725, Pt_Chr0306902, Pt_Chr0306907 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr23G000280, Chr25G000200, Chr25G011300, Chr26G018920 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G1012700, Tel2E01G534700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG043920, gene_TRIDC2AG080780 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G302800.1, TraesCS2A02G570800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb076230_P001, Zm00001eb082830_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-23271 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20740 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.1533, evm.TU.LG09.338 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc05g16840, gene.Posoc05g20260 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.2092, evm.TU.Scaffold_2_RagTag.326 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-4869, nbisL1-mrna-5901 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13160 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3445, nbisL1-mrna-3446 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.209 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016421 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2502, nbisL1-mrna-4768 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14031 |
| Salicaceae | Populus euphratica | 2 | populus_peu09014, populus_peu36329 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599032 |
| Solanaceae | Solanum chilense | 1 | SOLCI005038200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005875 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_16885, gene_16886 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G0898 |
| Zosteraceae | Zostera marina | 2 | Zosma02g07030.v3.1, Zosma05g11770.v3.1 |