Basic Information
Locus ID:
Ag9G00155
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 5515569 | 5522609 | - | Ag9G00155 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 124,506.62 Da | 37.09 | 107.28 | 0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16702 | RING_CH-C4HC3_MARCH6 | 74 | 123 | 3.43194E-30 | - |
| Pfam | PF12906 | RING-variant domain | 75 | 121 | 1.9E-15 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 69 | 126 | 1.49E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 59 | 133 | 7.1E-23 | IPR013083 |
| SMART | SM00744 | ringv_2 | 74 | 122 | 1.4E-24 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 67 | 128 | 24.117731 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 262 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 58 | - | - |
| Coils | Coil | Coil | 293 | 313 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34100.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017256135.1 | PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X1 [Daucus carota subsp. sativus] | 0 |
| F4JKK0 | Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis thaliana OX=3702 GN=SUD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164VNV2 | RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022010 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 45.648521 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 37.053535 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 38.999146 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 44.059841 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 40.578705 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 49.887104 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 42.159729 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 45.588402 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 84.501427 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 83.378738 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 92.084976 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 94.870071 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 86.543983 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 75.577133 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 58.93161 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 58.246452 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 50.546925 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 58.943249 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 44.202835 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 55.810932 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 64.734009 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 61.021832 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 61.566963 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 51.62188 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 57.258823 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 63.989464 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 55.780369 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 55.939468 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 62.990314 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 17.114986 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 15.645548 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 14.146253 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 35.90554 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 35.269592 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 29.050913 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 29.651615 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 26.465199 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 25.408691 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 51.708702 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 37.721863 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 26.275957 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 93.385437 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 104.897324 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 173.648376 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 162.753311 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 81.006584 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 135.128418 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 46.153725 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 49.024952 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 47.83363 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1099, jg28660 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21757 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009959 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g224330 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11147, Sbi_jg46116 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20462 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005489 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55747, Sgl60962 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018737, gene:ENSEOMG00000037088 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0005070, CQ.Regalona.r1.9AG0019420 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30213710 |
| Apiaceae | Apium graveolens | 2 | Ag2G01473, Ag9G00155 |
| Arecaceae | Cocos nucifera | 2 | COCNU_11G007770, scaffold000191G000040 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103706508, gene-LOC103711508 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.3253.V1.1, AsparagusV1_Unassigned.826.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri14G00544, Ftri15G00836, Ftri7G33574, Ftri8G10188 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G34100.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10022448m.g.v1.0, Thhalv10024280m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp7g31810.v2.2, SpUn0912_0010.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g004180.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G2110 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G2334 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno13g02170, gene.Cymno17g04670 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g25640 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.1108, evm.TU.LG08.500 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012304 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G17544, Lb7G33885 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2404, BH06.2201, CH06.2419 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0545980, gene-QOZ80_6BG0499380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0746090.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_036733 |
| Poaceae | Oryza coarctata | 2 | Oco11G013560, Oco12G013700 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g43210.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_10G202600, gene-BS78_K255500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0401639, Pt_Chr0401658 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G030640, Chr05G008390, Chr10G018680, Chr11G003910 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G913300 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7AG073430 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G524600.2, TraesCS7B02G442100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb275450_P001, Zm00001eb387290_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40933, nbis-gene-9944 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30868, Zma_g33119 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.1466, evm.TU.LG08.866, evm.TU.LG09.425 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g04690 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.338 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4858 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17147 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9802 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.752 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005318 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2508 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6054 |
| Salicaceae | Populus euphratica | 2 | populus_peu01516, populus_peu36318 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599023 |
| Solanaceae | Solanum chilense | 1 | SOLCI000181600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002825 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.11587_chr02_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0314 |
| Zosteraceae | Zostera marina | 1 | Zosma03g23310.v3.1 |