Basic Information
Locus ID:
Ag9G00134
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 4602103 | 4604074 | + | Ag9G00134 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.55 | 24,951.25 Da | 28.08 | 72.75 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15910.1 | CSL zinc finger domain-containing protein. | 0 |
| RefSeq | XP_017256233.1 | PREDICTED: uncharacterized protein LOC108225787 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164VM62 | Expp1 protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022074 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 3.311143 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.382665 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.098372 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.06462 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.111081 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.493708 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.474035 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.302005 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 11.505036 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 8.353542 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 7.218111 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.340992 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.238434 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 9.08564 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.018618 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 2.217678 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.528783 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.21445 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.885858 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 3.970455 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 2.339722 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 2.270626 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg15166, jg28716, jg31902 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_21594, gene_2315 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah003106, Ah010344 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g108670, BVRB_9g218380 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg10238, Sbi_jg12520, Sbi_jg17015, Sbi_jg48006 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg20152, Seu_jg22218, Seu_jg287 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001834, GOSA_00022389 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl00029, Sgl05099, Sgl51453, Sgl56741 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000006488, gene:ENSEOMG00000021816 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5AG0011180, CQ.Regalona.r1.5BG0011750 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30276790 |
| Apiaceae | Apium graveolens | 2 | Ag10G02107, Ag9G00134 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G008110 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103705763, gene-LOC103722495 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_06.1852.V1.1, AsparagusV1_07.3379.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G08779, Ftri16G14114, Ftri3G10534 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G15910.1, AT3G11800.1, AT3G44150.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10010660m.g.v1.0, Thhalv10021362m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp3g10020.v2.2, Sp3g29220.v2.2, Sp5g17210.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g053230.2N, BniB02g012370.2N, BniB07g025560.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq04G1233, Ceq05G1887, Ceq09G0019 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl04G1394, Cgl04G1396, Cgl05G1877, Cgl09G0023 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g07480, gene.Cymno06g14130 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g04690, gene.Thate04g24820 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8518 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1891, evm.TU.LG08.44 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00003651, Pov_00007575, Pov_00010158 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G26407 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.1322, AH01.142, BH01.1376, BH03.3884, CH01.1419 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0213320, gene-QOZ80_3AG0223940 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0508020.1, HORVU.MOREX.r3.5HG0517050.1 |
| Poaceae | Oryza coarctata | 4 | Oco05G019050, Oco05G025540, Oco06G019940, Oco06G026400 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g44560.1, LOC_Os03g57320.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G056700, gene-BS78_01G142600 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0104524, Pt_Chr0105306, Pt_Chr0105307 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G009250, Chr04G025010, Chr04G030140, Chr06G021200 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G594100, Tel5E01G667100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG054520, gene_TRIDC5AG061610 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G373400.1, TraesCS5A02G425700.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb050310_P002, Zm00001eb213330_P001 ... |
| Poaceae | Zoysia japonica | 5 | nbis-gene-15287, nbis-gene-16417, nbis-gene-20507 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g2615, Zma_g3172, Zma_g857 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG04.2764, evm.TU.LG08.1876, evm.TU.LG08.427 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g19360, gene.Posoc03g00130 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.1320, evm.TU.Scaffold_2_RagTag.266 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-4925, nbisL1-mrna-6277 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-18152, nbisL1-mrna-891 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-4123, nbisL1-mrna-9861 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.789, evm.TU.utg000016l.391 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016524 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2468, nbisL1-mrna-7563 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13497, nbisL1-mrna-6117 |
| Salicaceae | Populus euphratica | 3 | populus_peu08953, populus_peu12397, populus_peu25982 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132606514, gene-LOC132607237 |
| Solanaceae | Solanum chilense | 2 | SOLCI006715500, SOLCI006908500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107001703, gene-LOC107002142 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.15979_chr06_+, STRG.24983_chr08_-, gene_7798 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G2709, TC09G0667 |
| Zosteraceae | Zostera marina | 1 | Zosma05g30220.v3.1 |