Basic Information
Locus ID:
Ag9G00120
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 4499192 | 4506118 | + | Ag9G00120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 67,756.27 Da | 57.20 | 64.03 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 191 | 253 | 9.7E-13 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 191 | 260 | 3.3E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 261 | 318 | 6.56E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 115 | 203 | 4.24E-18 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 249 | 497 | 3.7E-61 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 113 | 204 | 4.2E-18 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 261 | 326 | 0.032 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 191 | 253 | 8.3E-23 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 120 | 168 | 9.538678 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 116 | 330 | 45.153656 | IPR044066 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 548 | 569 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 548 | 564 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16090.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017256154.1 | PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Daucus carota subsp. sativus] | 0 |
| Q84RR2 | Probable E3 ubiquitin-protein ligase ARI2 OS=Arabidopsis thaliana OX=3702 GN=ARI2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164VLU9 | RBR-type E3 ubiquitin transferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022089 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 19.904875 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 16.708252 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 17.394203 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 19.803598 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 19.138147 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 17.854803 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 18.742504 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 17.641417 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 27.132561 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 27.473715 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 26.806177 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 30.057667 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 25.178276 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 26.347792 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 10.675651 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 9.875213 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.298005 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.179871 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 10.170372 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 12.467758 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 15.251126 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 15.449365 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 15.420085 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 15.90484 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 12.739569 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 17.731066 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 14.171089 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 13.90157 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 15.267255 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 10.288775 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 11.729124 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 10.284204 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 15.241359 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 13.101654 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 12.369867 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 11.196394 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 6.671325 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 9.828913 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 17.795778 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 14.825655 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 14.425154 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 14.16195 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 13.032189 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 13.176056 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 17.085217 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 15.370504 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 19.449049 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 17.990551 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 17.449354 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 16.738873 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg1027, jg26226, jg28736 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_776 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah010307, Ah010309, Ah037106 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g013200 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39498, Sbi_jg54838 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14833 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00021749, GOSA_00022405 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12871, Sgl18113 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000012948, gene:ENSEOMG00000015881 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0019850, CQ.Regalona.r1.1BG0005220 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30046010, pistato.v30113730 |
| Apiaceae | Apium graveolens | 3 | Ag1G00912, Ag4G02775, Ag9G00120 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G000220, COCNU_06G019900 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103707484, gene-LOC103720788, gene-LOC103720794 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.810.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri14G13598, Ftri16G30539, Ftri7G28213 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT2G16090.1, AT3G27710.1, AT3G27720.1, AT4G34370.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10005453m.g.v1.0, Thhalv10022996m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g16830.v2.2, Sp3g29350.v2.2, Sp7g32160.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB03g063270.2N, BniB04g007150.2N, BniB05g003940.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0040 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G1777, Cgl09G0046 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g08940 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g10830 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5629 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.89 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00007552 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G15806 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4458, CH01.5068, Contig192.100 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0239580, gene-QOZ80_3BG0288440 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0394930.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_069782 |
| Poaceae | Oryza coarctata | 2 | Oco05G007370, Oco06G007630 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g13100.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G431600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0101832 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G028360, Chr04G000930, Chr07G000960, Chr12G011090 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G409300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG009110, gene_TRIDC4BG041790 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G061500.1, TraesCS4B02G236900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb009370_P002, Zm00001eb399570_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2413, nbis-gene-4015 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g4112 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.905, evm.TU.LG23.112 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g18940 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.2163, evm.TU.Scaffold_2_RagTag.251 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-19096, nbisL1-mrna-4949, nbisL1-mrna-5973 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-18719, nbisL1-mrna-761 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-21865, nbisL1-mrna-9876 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.535, evm.TU.utg000009l.798 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004894, Maker00012058 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14723, nbisL1-mrna-5842 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-12467, nbisL1-mrna-1292 |
| Salicaceae | Populus euphratica | 1 | populus_peu36430 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132599135, gene-LOC132604117, gene-LOC132627948 |
| Solanaceae | Solanum chilense | 3 | SOLCI003002400, SOLCI003581900, SOLCI007325000 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107005315, gene-LOC107008440, gene-LOC107017931 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.10043_chr06_+, gene_1925, gene_7808 |
| Tamaricaceae | Tamarix chinensis | 3 | TC04G2315, TC09G1199, TC10G0527 |
| Zosteraceae | Zostera marina | 1 | Zosma05g23110.v3.1 |