Basic Information
Locus ID:
Ag9G00119
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Methyltransferase-like protein 13
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 4485555 | 4489525 | + | Ag9G00119 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.85 | 30,167.70 Da | 28.97 | 70.00 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02440 | AdoMet_MTases | 65 | 181 | 9.12631E-18 | - |
| Pfam | PF13847 | Methyltransferase domain | 61 | 181 | 2.3E-18 | IPR025714 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 29 | 217 | 2.3E-31 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 24 | 233 | 1.7E-66 | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34360.1 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein. | 0 |
| RefSeq | XP_017255699.1 | PREDICTED: methyltransferase-like protein 13 [Daucus carota subsp. sativus] | 0 |
| P0DPE1 | EEF1A lysine methyltransferase 4 OS=Bos taurus OX=9913 GN=EEF1AKMT4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164VLU0 | NAD(P)-bd_dom domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022090 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 5.305195 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.78404 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.13854 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.727942 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.234506 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.650563 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.298024 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.316402 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 4.812666 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 5.901261 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 7.811568 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 7.108232 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 6.933992 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 5.08356 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.305969 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.699183 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.464743 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.367891 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.89519 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 4.85454 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.049765 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 11.994573 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 12.245671 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 11.440133 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.223742 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 6.392607 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 6.445088 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.022941 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 4.938668 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.817536 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.721092 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.967021 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.534251 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.68012 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 8.155973 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.798598 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.808259 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.232859 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.991719 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.109341 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.483426 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.379445 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 10.564569 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 6.818739 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 3.484267 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.868217 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.484734 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 10.531463 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 12.150281 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 12.404887 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg1026 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_21611, gene_21613, gene_21614 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010306 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g218050 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg45826 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20185 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022406 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl00016, Sgl02376, Sgl05084, Sgl07505 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018703, gene:ENSEOMG00000037783 ... |
| Amaranthaceae | Chenopodium quinoa | 7 | CQ.Regalona.r1.4AG0009850, CQ.Regalona.r1.7BG0008160 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30113740 |
| Apiaceae | Apium graveolens | 1 | Ag9G00119 |
| Arecaceae | Cocos nucifera | 1 | scaffold025950G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723941 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.2253.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G07064 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G34360.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10026003m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g32150.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g003950.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0041 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0047 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g03410 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0194s00010.v1.0 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.90 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00035659 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G17218, Lb3G17225 |
| Poaceae | Echinochloa crus-galli | 4 | AH04.1633, AH07.1863, BH04.1646, CH04.1879 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0685390, gene-QOZ80_9BG0711520 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0125940.1, HORVU.MOREX.r3.7HG0703680.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_038626, gene-QYE76_059193, gene-QYE76_066570 |
| Poaceae | Oryza coarctata | 2 | Oco21G007300, Oco22G008430 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g35340.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G169700, gene-BS78_05G169900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103119, Pt_Chr0103125 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr31G006780 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G335200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG021730, gene_TRIDC2BG026300 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G171500.1, TraesCS2B02G197900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb201910_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-44235 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18074 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.403, evm.TU.LG09.1645 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g06500 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.2164 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-5974 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16917 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3376 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.173 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016774 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4734 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14088 |
| Salicaceae | Populus euphratica | 1 | populus_peu08916 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599137 |
| Solanaceae | Solanum chilense | 1 | SOLCI003002300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002689, gene-LOC114078438 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7809 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0525 |
| Zosteraceae | Zostera marina | 1 | Zosma06g06980.v3.1 |