Basic Information
Locus ID:
Ag9G00113
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Phospholipase A-2-activating
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 4384611 | 4403422 | + | Ag9G00113 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 83,762.24 Da | 37.63 | 97.19 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 10 | 292 | 6.75018E-57 | - |
| Pfam | PF09070 | PFU (PLAA family ubiquitin binding) | 339 | 447 | 4.2E-37 | IPR015155 |
| Pfam | PF00400 | WD domain, G-beta repeat | 140 | 176 | 0.013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 222 | 255 | 0.069 | IPR001680 |
| Pfam | PF08324 | PUL domain | 486 | 750 | 3.0E-59 | IPR013535 |
| Pfam | PF00400 | WD domain, G-beta repeat | 258 | 292 | 0.0038 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 179 | 214 | 2.4E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 104 | 136 | 0.24 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 12 | 44 | 0.019 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 5 | 300 | 1.33E-55 | IPR036322 |
| SUPERFAMILY | SSF48371 | ARM repeat | 552 | 717 | 1.1E-5 | IPR016024 |
| Gene3D | G3DSA:3.10.20.870 | - | 378 | 452 | 6.6E-26 | IPR038122 |
| Gene3D | G3DSA:1.25.10.10 | - | 484 | 754 | 2.5E-71 | IPR011989 |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 311 | 1.3E-72 | IPR015943 |
| SMART | SM00320 | WD40_4 | 138 | 176 | 0.001 | IPR001680 |
| SMART | SM00320 | WD40_4 | 177 | 215 | 4.9E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 7 | 45 | 3.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 53 | 97 | 4.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 256 | 293 | 7.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 100 | 137 | 0.03 | IPR001680 |
| SMART | SM00320 | WD40_4 | 217 | 255 | 7.0E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 60 | 106 | 8.570195 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 14 | 54 | 9.40565 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 184 | 214 | 9.256512 | - |
| ProSiteProfiles | PS51394 | PFU domain profile. | 359 | 455 | 35.859928 | IPR015155 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 145 | 176 | 9.639578 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 184 | 214 | 11.043142 | IPR001680 |
| ProSiteProfiles | PS51396 | PUL domain profile. | 484 | 754 | 29.134359 | IPR013535 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 84 | 98 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 202 | 216 | 9.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 32 | 46 | 9.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 163 | 177 | 9.5E-6 | IPR020472 |
| Coils | Coil | Coil | 677 | 697 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18860.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_017258436.1 | PREDICTED: phospholipase A-2-activating protein [Daucus carota subsp. sativus] | 0 |
| P27612 | Phospholipase A-2-activating protein OS=Mus musculus OX=10090 GN=Plaa PE=1 SV=4 | 0 | |
| TrEMBL | A0A164VLQ8 | Phospholipase A-2-activating protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022097 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 36.584064 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 26.200678 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 24.917459 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 26.078564 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 24.448849 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 23.415487 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 24.930416 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 17.94879 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 40.120686 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 44.690037 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 45.166557 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 50.724285 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 46.895725 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 41.740147 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 18.274965 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 21.968878 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 17.365284 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 22.747616 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 19.417381 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 27.976818 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 27.972683 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 30.908422 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 29.372669 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 35.708347 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 29.803293 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 27.001741 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 22.906956 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 19.608143 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 26.700737 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 6.174231 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.183713 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.51002 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 11.493002 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 17.395704 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 12.96045 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.709257 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.584648 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.586512 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 31.054504 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 16.847841 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 16.955944 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 55.543354 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 41.066357 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 22.014492 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 22.891258 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 54.080563 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 26.434473 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 35.921181 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 42.31414 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 42.013103 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28741 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21622 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010291 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g144170, BVRB_9g217900 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12482, Sbi_jg45834 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20193 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022412 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl00010, Sgl05076 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018164, gene:ENSEOMG00000036625 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.7BG0008060, CQ.Regalona.r1.9AG0016470 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30113810 |
| Apiaceae | Apium graveolens | 1 | Ag9G00113 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G019770, COCNU_06G019780 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103720793, gene-LOC103721263 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.3102.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G33535 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G18860.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020129m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g16960.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g045490.2N, BniB07g030200.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0048 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0054 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g00530 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0103s00015.v1.0, Dusal.0103s00016.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g30790 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5681 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.95 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00035638 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G17221, Lb3G17231 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.148, BH03.180, CH03.237 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0554340, gene-QOZ80_7BG0585410 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0154580.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_041942 |
| Poaceae | Oryza coarctata | 2 | Oco13G000820, Oco14G000880 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g03160.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G021700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0303447, Pt_Chr0303466 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr0G005180, Chr24G002030, Chr28G000530 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G471800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG038060, gene_TRIDC2BG040020 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G266700.1, TraesCS2B02G275700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb299230_P005 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-35844 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g4702 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.Contig29.2, evm.TU.LG08.1826, evm.TU.LG22.36 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g27960 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.247 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4956 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18724 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9881 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.803 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005978 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14729 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1286 |
| Salicaceae | Populus euphratica | 3 | populus_peu08910, populus_peu36437, populus_peu36441 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599142 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007899 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7815 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0516 |
| Zosteraceae | Zostera marina | 1 | Zosma06g01730.v3.1 |