Basic Information
Locus ID:
Ag9G00109
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 4322803 | 4325867 | + | Ag9G00109 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.57 | 21,937.97 Da | 51.97 | 92.46 | -0.10 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36720.1 | HVA22-like protein K. | 0 |
| RefSeq | XP_017255513.1 | PREDICTED: HVA22-like protein k [Daucus carota subsp. sativus] | 0 |
| Q6NLY8 | HVA22-like protein k OS=Arabidopsis thaliana OX=3702 GN=HVA22K PE=2 SV=1 | 0 | |
| TrEMBL | A0A164VLL8 | HVA22-like protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022101 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 18.024065 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 13.548166 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 13.097834 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 18.798653 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 16.675484 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 22.723713 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 17.236744 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 20.95751 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 18.826538 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 20.215868 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 21.604441 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 18.105883 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 13.420102 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 13.585164 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.554263 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.561539 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 12.736769 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.17017 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 12.275887 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 6.963628 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 12.386252 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 14.54621 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 12.097771 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 12.849502 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 11.956683 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 10.907022 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.115897 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 11.64292 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 13.925797 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 15.719797 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 12.413662 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 9.451402 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 22.413874 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 20.268656 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 22.673992 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 14.795055 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 12.250546 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 10.096681 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 9.884182 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 10.994555 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 7.20575 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 23.288973 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 23.91337 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 44.020557 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 44.530682 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 28.194826 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 32.147926 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 25.34231 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 31.811586 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 31.394608 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1018, jg28746 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26407 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010282 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g217770 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12476, Sbi_jg45841 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20200 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022418 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl00005, Sgl05071 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000020074, gene:ENSEOMG00000038636 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0008000, CQ.Regalona.r1.9AG0016530 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30113960, pistato.v30207580 |
| Apiaceae | Apium graveolens | 2 | Ag4G00491, Ag9G00109 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G012090 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103704555 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1164.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri3G06030, Ftri7G09324 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G36720.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10026250m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g34380.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g088160.2N, BniB03g013950.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0743 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0753 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno06g02960, gene.Cymno16g02250 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0951s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g15420 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2291, evm.TU.LG08.104 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00007543 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G10833, Lb3G17239 |
| Poaceae | Echinochloa crus-galli | 1 | AH03.3438 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0573200, gene-QOZ80_7BG0604500 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0133660.2 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_040448, gene-QYE76_040486 |
| Poaceae | Oryza coarctata | 2 | Oco13G010380, Oco14G011020 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g38100.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G319700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0304469 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G004080, Chr24G010440, Chr27G013190, Chr28G009720 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G381100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG025730, gene_TRIDC2BG030270 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G200000.1, TraesCS2B02G227600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb148430_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-10575 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g5378 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.393, evm.TU.LG08.1831, evm.TU.LG09.1636 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g23000, gene.Posoc09g08240 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.2171, evm.TU.Scaffold_6_RagTag.1989 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-17141, nbisL1-mrna-17142, nbisL1-mrna-5983 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16911, nbisL1-mrna-21180 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11812, nbisL1-mrna-3369 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.1205, evm.TU.utg000016l.167 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017141 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-15576, nbisL1-mrna-15577, nbisL1-mrna-4727 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14096, nbisL1-mrna-3111 |
| Salicaceae | Populus euphratica | 1 | populus_peu23536 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132606560, gene-LOC132632485 |
| Solanaceae | Solanum chilense | 1 | SOLCI002974400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107012428, gene-LOC107032376 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.15781_chr06_-, gene_16827, gene_3442 |
| Zosteraceae | Zostera marina | 1 | Zosma06g10500.v3.1 |