Basic Information
Locus ID:
Ag9G00098
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the CAP family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 4126541 | 4132079 | + | Ag9G00098 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.68 | 50,618.24 Da | 39.56 | 79.30 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08603 | Adenylate cyclase associated (CAP) C terminal | 312 | 469 | 5.6E-60 | IPR013912 |
| Pfam | PF01213 | Adenylate cyclase associated (CAP) N terminal | 4 | 55 | 1.9E-7 | IPR013992 |
| SUPERFAMILY | SSF101278 | N-terminal domain of adenylylcyclase associated protein, CAP | 40 | 236 | 1.27E-55 | IPR036222 |
| SUPERFAMILY | SSF69340 | C-terminal domain of adenylylcyclase associated protein | 312 | 471 | 4.71E-58 | IPR036223 |
| Gene3D | G3DSA:2.160.20.70 | - | 311 | 471 | 3.9E-67 | IPR016098 |
| Gene3D | G3DSA:1.25.40.330 | - | 39 | 214 | 4.2E-48 | IPR036222 |
| SMART | SM00673 | carp | 350 | 387 | 3.3E-11 | IPR006599 |
| SMART | SM00673 | carp | 388 | 425 | 1.8E-8 | IPR006599 |
| ProSiteProfiles | PS51329 | C-CAP/cofactor C-like domain profile. | 312 | 449 | 38.75029 | IPR017901 |
| ProSitePatterns | PS01088 | CAP protein signature 1. | 6 | 18 | - | IPR018106 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 241 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34490.1 | cyclase associated protein 1. CYCLASE ASSOCIATED PROTEIN | 0 |
| RefSeq | XP_017258319.1 | PREDICTED: cyclase-associated protein 1-like [Daucus carota subsp. sativus] | 0 |
| O65902 | Cyclase-associated protein 1 OS=Arabidopsis thaliana OX=3702 GN=CAP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164V234 | Adenylyl cyclase-associated protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022933 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 19.208519 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 15.789495 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 18.007799 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 18.073292 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 18.463884 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 22.30711 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 16.672846 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 20.574169 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 52.80201 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 58.475277 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 59.838612 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 57.156143 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 52.2327 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 46.395012 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 47.58654 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 48.086506 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 41.906563 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 47.102608 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 49.296906 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 66.155212 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 29.317768 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 56.72187 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 109.968277 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 63.69767 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 56.538696 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 31.702723 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 69.379692 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 42.176479 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 34.348644 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.419947 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.230072 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.557805 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 9.049285 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 22.364927 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 8.22655 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.01904 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.484777 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.744728 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 24.026657 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 19.044083 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 19.182781 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 17.414408 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 17.309942 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 12.44136 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 31.236605 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 13.199651 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 22.51717 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 5.952331 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 4.681485 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 2.415922 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg998 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21641 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010248 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g217530 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12451, Sbi_jg45865 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20222 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022440 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl56087, Sgl61420, Sgl61655 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019686, gene:ENSEOMG00000037568 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0007750, CQ.Regalona.r1.9AG0016780 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30114230 |
| Apiaceae | Apium graveolens | 4 | Ag1G00927, Ag7G01701, Ag9G00051, Ag9G00098 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G001290, COCNU_13G005290 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103697965, gene-LOC103704236, gene-LOC120103922 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.2520.V1.1, AsparagusV1_08.826.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri15G02463, Ftri3G01619, Ftri4G12843 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G34490.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025082m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g32280.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g087030.2N, BniB03g020690.2N, BniB05g003810.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0099 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0116 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g14060 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1138s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g31820, gene.Thate06g14370 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.129 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007529, Pov_00035831 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb2G13461, Lb2G13466, Lb2G13467, Lb3G17964 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.778, AH08.1725, BH01.924, BH08.1773, CH01.939 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0218360, gene-QOZ80_3BG0263600 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0338300.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_031309, gene-QYE76_062298 |
| Poaceae | Oryza coarctata | 4 | Oco05G022130, Oco06G022980, Oco15G013540, Oco16G009020 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g51250.1, LOC_Os08g34780.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G099600, gene-BS78_07G153100 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr04G027460, Chr07G026380, Chr12G030840, Chr16G014820 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G092900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG040750, gene_TRIDC4BG008420 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G260800.1, TraesCS4B02G053800.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb040800_P001, Zm00001eb055650_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-14895, nbis-gene-15977 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2917, Zma_g599 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1844, evm.TU.LG22.20 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g26470 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.222 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4987 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14093, nbisL1-mrna-18732 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3283, nbisL1-mrna-9901 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.821, evm.TU.utg000016l.95 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005746, Maker00016887 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14745, nbisL1-mrna-4653 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1261, nbisL1-mrna-22417 |
| Salicaceae | Populus euphratica | 2 | populus_peu08881, populus_peu36469 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132599165, gene-LOC132606564, gene-LOC132620192 |
| Solanaceae | Solanum chilense | 2 | SOLCI000662700, SOLCI003828100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002530, gene-LOC107008896 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16831 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1044 |
| Zosteraceae | Zostera marina | 2 | Zosma04g03110.v3.1, Zosma06g02590.v3.1 |