halophFGD

Basic Information

Locus ID: Ag9G00097

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the protein kinase superfamily

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	4120265	4120762	+	Ag9G00097

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.39	18,166.75 Da	40.52	101.52	-0.04

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	112	161	7.87E-10	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	100	165	1.9E-13	-
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	137	159	-	IPR017441

Gene Ontology

Molecular Function:

GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G34500.1	Protein kinase superfamily protein.
RefSeq	XP_017228150.1	PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500, partial [Daucus carota subsp. sativus]
Swiss-Prot	Q6NKZ9	Probable receptor-like serine/threonine-protein kinase At4g34500 OS=Arabidopsis thaliana OX=3702 GN=At4g34500 PE=2 SV=1
TrEMBL	A0A175YBD3	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_000223 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	13.775251	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	16.866558	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	19.071342	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	15.143093	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	14.911123	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	36.577049	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	16.365078	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	31.639336	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	13.494576	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	14.216088	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	11.579565	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	12.783755	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	8.714931	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	8.393229	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	2.938622	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	4.655155	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	4.075701	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	2.499717	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	9.364669	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	5.272315	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.926588	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	6.431798	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	6.712493	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	7.097427	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	8.864408	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	2.476645	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	3.199018	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	11.454856	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	9.255565	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.269836		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.032465		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.08667		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	3.117454		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	2.77161		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	4.381836		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.081077		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.00468		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	7.013557	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.826097	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.336321	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	14.067442	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	1.614214	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	5.471208	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.484328	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	9.017469	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	2	Ag9G00052, Ag9G00097
Asparagaceae	Asparagus officinalis	1	AsparagusV1_08.1670.V1.1
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g29270
Portulacaceae	Portulaca oleracea	1	evm.TU.LG06.454