halophFGD

Basic Information

Locus ID: Ag9G00052

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the protein kinase superfamily

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	3529432	3529929	-	Ag9G00052

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.25	18,138.65 Da	41.19	100.91	-0.04

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	111	161	6.83E-10	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	99	165	1.7E-13	-
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	137	159	-	IPR017441

Gene Ontology

Molecular Function:

GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G34500.1	Protein kinase superfamily protein.
RefSeq	XP_017228150.1	PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500, partial [Daucus carota subsp. sativus]
Swiss-Prot	Q6NKZ9	Probable receptor-like serine/threonine-protein kinase At4g34500 OS=Arabidopsis thaliana OX=3702 GN=At4g34500 PE=2 SV=1
TrEMBL	A0A175YBD3	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_000223 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.407476	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	3.63574	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	1.501332	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	1.710543	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	1.265215	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.346093	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	1.936078	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.528605	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	3.168986	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	4.278407	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	3.33427	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	24.378025	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	1.48795	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	3.201855	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	15.39219	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	8.049772	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	2.755502	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	2.727127	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	1.754525	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	14.815962	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	11.278451	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.991077	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	7.816909	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.054873		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.28801		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	4.819386		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	1.788453		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	3.708508		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.666663		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.811296	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.40636	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.207273	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.429005	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.155789	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.793935	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	10.225321	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	13.262869	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	6.8325	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	2	Ag9G00052, Ag9G00097
Asparagaceae	Asparagus officinalis	1	AsparagusV1_08.1670.V1.1
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g29270
Portulacaceae	Portulaca oleracea	1	evm.TU.LG06.454