Basic Information
Locus ID:
Ag9G00051
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the CAP family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 3513782 | 3523586 | - | Ag9G00051 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 85,470.80 Da | 37.52 | 79.30 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 477 | 787 | 1.06866E-76 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 570 | 605 | 0.0019 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 661 | 696 | 1.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 712 | 743 | 0.0099 | IPR001680 |
| Pfam | PF01213 | Adenylate cyclase associated (CAP) N terminal | 4 | 55 | 3.8E-7 | IPR013992 |
| Pfam | PF00400 | WD domain, G-beta repeat | 621 | 653 | 0.029 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 477 | 513 | 9.8E-6 | IPR001680 |
| Pfam | PF08603 | Adenylate cyclase associated (CAP) C terminal | 312 | 464 | 2.6E-57 | IPR013912 |
| SUPERFAMILY | SSF69340 | C-terminal domain of adenylylcyclase associated protein | 312 | 463 | 1.96E-55 | IPR036223 |
| SUPERFAMILY | SSF101278 | N-terminal domain of adenylylcyclase associated protein, CAP | 40 | 236 | 6.54E-56 | IPR036222 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 472 | 787 | 8.01E-68 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 465 | 565 | 1.5E-19 | IPR015943 |
| Gene3D | G3DSA:2.160.20.70 | - | 311 | 464 | 1.5E-63 | IPR016098 |
| Gene3D | G3DSA:2.130.10.10 | - | 659 | 793 | 2.3E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 566 | 658 | 2.0E-18 | IPR015943 |
| Gene3D | G3DSA:1.25.40.330 | - | 39 | 214 | 4.1E-48 | IPR036222 |
| SMART | SM00673 | carp | 388 | 425 | 1.8E-8 | IPR006599 |
| SMART | SM00320 | WD40_4 | 612 | 653 | 4.3E-6 | IPR001680 |
| SMART | SM00673 | carp | 350 | 387 | 3.3E-11 | IPR006599 |
| SMART | SM00320 | WD40_4 | 565 | 605 | 3.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 474 | 513 | 7.1E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 749 | 789 | 0.68 | IPR001680 |
| SMART | SM00320 | WD40_4 | 699 | 743 | 0.024 | IPR001680 |
| SMART | SM00320 | WD40_4 | 516 | 555 | 0.039 | IPR001680 |
| SMART | SM00320 | WD40_4 | 657 | 696 | 2.8E-9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 572 | 614 | 11.945434 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 481 | 522 | 15.487762 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 664 | 705 | 13.68318 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 481 | 513 | 12.156496 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 620 | 655 | 9.810144 | - |
| ProSiteProfiles | PS51329 | C-CAP/cofactor C-like domain profile. | 312 | 449 | 38.75029 | IPR017901 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 664 | 700 | 10.469233 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 620 | 662 | 12.01227 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 572 | 609 | 9.572873 | - |
| ProSitePatterns | PS01088 | CAP protein signature 1. | 6 | 18 | - | IPR018106 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 592 | 606 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 592 | 606 | 5.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 500 | 514 | 5.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 640 | 654 | 5.4E-6 | IPR020472 |
| PRINTS | PR00319 | Beta G protein (transducin) signature | 481 | 497 | 7.0E-27 | IPR001632 |
| PRINTS | PR00319 | Beta G protein (transducin) signature | 519 | 534 | 7.0E-27 | IPR001632 |
| PRINTS | PR00319 | Beta G protein (transducin) signature | 500 | 514 | 7.0E-27 | IPR001632 |
| PRINTS | PR00319 | Beta G protein (transducin) signature | 537 | 554 | 7.0E-27 | IPR001632 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 241 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34490.1 | cyclase associated protein 1. CYCLASE ASSOCIATED PROTEIN | 0 |
| RefSeq | XP_017258319.1 | PREDICTED: cyclase-associated protein 1-like [Daucus carota subsp. sativus] | 0 |
| O65902 | Cyclase-associated protein 1 OS=Arabidopsis thaliana OX=3702 GN=CAP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7J0ETM8 | GTP binding protein beta 1 OS=Actinidia rufa OX=165716 GN=Acr_06g0016300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 9.245961 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.598563 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 8.048051 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 8.125373 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.358681 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.267011 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 8.939448 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.297574 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 10.803185 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 8.118326 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 13.198402 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 12.853331 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 8.530989 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 11.886016 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 45.361206 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 60.814762 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 50.760475 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 57.953472 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 45.319912 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 46.983765 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 47.53067 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 62.123013 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 62.197655 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 69.049484 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 66.094444 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 79.039879 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 64.17823 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 48.599037 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 93.078217 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 20.882414 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 28.10817 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 22.238382 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 23.62993 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 14.766059 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 24.68704 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 18.888382 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 16.38817 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 16.969042 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 20.101988 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 15.539948 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 15.290524 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 48.844814 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 51.603893 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 34.726673 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 27.050268 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 40.592148 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 52.433445 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 34.606724 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 31.449135 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 31.504232 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg998 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21641 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010248 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g217530 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12451, Sbi_jg45865 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20222 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022440 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl56087, Sgl61420, Sgl61655 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019686, gene:ENSEOMG00000037568 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0007750, CQ.Regalona.r1.9AG0016780 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30114230 |
| Apiaceae | Apium graveolens | 4 | Ag1G00927, Ag7G01701, Ag9G00051, Ag9G00098 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G001290, COCNU_13G005290 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103697965, gene-LOC103704236, gene-LOC120103922 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.2520.V1.1, AsparagusV1_08.826.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri15G02463, Ftri3G01619, Ftri4G12843 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G34490.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025082m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g32280.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g087030.2N, BniB03g020690.2N, BniB05g003810.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0099 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0116 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g14060 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1138s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g31820, gene.Thate06g14370 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.129 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007529, Pov_00035831 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb2G13461, Lb2G13466, Lb2G13467, Lb3G17964 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.778, AH08.1725, BH01.924, BH08.1773, CH01.939 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0218360, gene-QOZ80_3BG0263600 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0338300.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_031309, gene-QYE76_062298 |
| Poaceae | Oryza coarctata | 4 | Oco05G022130, Oco06G022980, Oco15G013540, Oco16G009020 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g51250.1, LOC_Os08g34780.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G099600, gene-BS78_07G153100 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr04G027460, Chr07G026380, Chr12G030840, Chr16G014820 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G092900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG040750, gene_TRIDC4BG008420 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G260800.1, TraesCS4B02G053800.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb040800_P001, Zm00001eb055650_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-14895, nbis-gene-15977 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2917, Zma_g599 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1844, evm.TU.LG22.20 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g26470 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.222 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4987 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14093, nbisL1-mrna-18732 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3283, nbisL1-mrna-9901 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.821, evm.TU.utg000016l.95 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005746, Maker00016887 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14745, nbisL1-mrna-4653 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1261, nbisL1-mrna-22417 |
| Salicaceae | Populus euphratica | 2 | populus_peu08881, populus_peu36469 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132599165, gene-LOC132606564, gene-LOC132620192 |
| Solanaceae | Solanum chilense | 2 | SOLCI000662700, SOLCI003828100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002530, gene-LOC107008896 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16831 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1044 |
| Zosteraceae | Zostera marina | 2 | Zosma04g03110.v3.1, Zosma06g02590.v3.1 |