halophFGD

Basic Information

Locus ID: Ag9G00005

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Ubiquitin fusion degradation protein 1 homolog

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	1349548	1353952	+	Ag9G00005

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.75	35,202.29 Da	48.43	61.85	-0.65

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF03152	Ubiquitin fusion degradation protein UFD1	13	184	8.3E-80	IPR004854
Gene3D	G3DSA:2.40.40.50	-	6	107	2.8E-44	IPR042299
Gene3D	G3DSA:3.10.330.10	-	109	182	1.2E-33	-
MobiDBLite	mobidb-lite	consensus disorder prediction	242	288	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	289	309	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	188	319	-	-

Gene Ontology

Biological Process:

GO:0006511 (ubiquitin-dependent protein catabolic process)

KEGG Pathway

KO Term:

K14016 (ubiquitin fusion degradation protein 1)

Pathway:

ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G21270.1	ubiquitin fusion degradation 1.
RefSeq	XP_038705347.1	ubiquitin recognition factor in ER-associated degradation protein 1-like [Tripterygium wilfordii]
Swiss-Prot	P70362	Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Mus musculus OX=10090 GN=Ufd1 PE=1 SV=2
TrEMBL	A0A5B6ZT41	Ubiquitin fusion degradation protein 1 homolog OS=Davidia involucrata OX=16924 GN=Din_017141 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	37.102398	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	33.03986	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	40.76582	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	38.354031	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	37.640316	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	47.696289	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	38.224663	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	38.31282	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	45.998844	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	44.240894	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	42.990761	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	36.390736	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	40.999084	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	33.844955	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	31.499813	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	35.361477	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	29.213278	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	27.109428	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	27.699156	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	51.689777	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	61.411644	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	48.425823	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	42.309952	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	45.135376	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	35.609612	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	32.487301	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	29.59465	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	38.517166	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	30.85689	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	35.438442		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	38.205078		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	24.669647		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	65.449715		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	65.935616		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	88.128365		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	47.760559		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	37.936733		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	48.008217		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	18.628067	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	22.403299	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	20.63884	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	141.19072	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	48.952744	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	15.295703	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	17.750393	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	125.397438	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	23.610567	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	40.170307	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	51.56591	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	46.464539	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg28812, jg948
Aizoaceae	Mesembryanthemum crystallinum	2	gene_21701, gene_5875
Amaranthaceae	Atriplex hortensis	3	Ah010100, Ah028004, Ah030781
Amaranthaceae	Beta vulgaris	3	BVRB_3g059920, BVRB_7g173590, BVRB_9g216260
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg11002, Sbi_jg1727, Sbi_jg34813, Sbi_jg46009
Amaranthaceae	Salicornia europaea	2	Seu_jg20335, Seu_jg3020
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00003222, GOSA_00005604, GOSA_00012763
Amaranthaceae	Suaeda glauca	26	Sgl02577, Sgl03208, Sgl03211, Sgl03266, Sgl03675, Sgl04917 ... Sgl08324, Sgl08329, Sgl08331, Sgl09973, Sgl14250, Sgl19410, Sgl20754, Sgl26142, Sgl31371, Sgl36690, Sgl43136, Sgl54509, Sgl56174, Sgl60870, Sgl64190, Sgl68644, Sgl73055, Sgl73073, Sgl76598, Sgl79253
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000006482, gene:ENSEOMG00000019061 ... gene:ENSEOMG00000036757, gene:ENSEOMG00000039071, gene:ENSEOMG00000040703, gene:ENSEOMG00000052176
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.3BG0020050, CQ.Regalona.r1.7AG0003060 ... CQ.Regalona.r1.7BG0006670, CQ.Regalona.r1.9AG0018030, CQ.Regalona.r1.9BG0002560
Anacardiaceae	Pistacia vera	2	pistato.v30115670, pistato.v30190700
Apiaceae	Apium graveolens	4	Ag1G00938, Ag6G02280, Ag8G01371, Ag9G00005
Arecaceae	Cocos nucifera	3	COCNU_07G007590, COCNU_10G005770, scaffold007799G000020
Arecaceae	Phoenix dactylifera	4	gene-LOC103698061, gene-LOC103716905, gene-LOC120105007 ... gene-LOC120108328
Asparagaceae	Asparagus officinalis	1	AsparagusV1_01.17.V1.1
Asteraceae	Flaveria trinervia	3	Ftri12G25544, Ftri17G10496, Ftri4G25097
Brassicaceae	Arabidopsis thaliana	3	AT2G21270.3, AT2G29070.2, AT4G38930.2
Brassicaceae	Eutrema salsugineum	2	Thhalv10000246m.g.v1.0, Thhalv10016960m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp4g00460.v2.2, Sp4g11890.v2.2, Sp7g36910.v2.2
Brassicaceae	Brassica nigra	3	BniB01g014870.2N, BniB01g022900.2N, BniB02g016960.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq07G1488, Ceq08G2131
Casuarinaceae	Casuarina glauca	2	Cgl07G1569, Cgl08G2234
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno01g07090, gene.Cymno14g02190
Dunaliellaceae	Dunaliella salina	1	Dusal.0121s00005.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g05130
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-7974
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG03.1052, evm.TU.LG03.1054, evm.TU.LG08.227 ... evm.TU.LG09.1243
Plantaginaceae	Plantago ovata	10	Pov_00000042, Pov_00001492, Pov_00007450, Pov_00011748 ... Pov_00011749, Pov_00013484, Pov_00018681, Pov_00018686, Pov_00039998, Pov_00040233
Plumbaginaceae	Limonium bicolor	2	Lb3G17364, Lb7G33382
Poaceae	Echinochloa crus-galli	13	AH02.1587, AH02.689, AH07.601, AH09.2014, BH02.1642 ... BH02.700, BH07.722, BH09.2173, CH02.1823, CH02.804, CH05.3035, CH09.2321, CH09.366
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_1BG0058130, gene-QOZ80_2AG0103870 ... gene-QOZ80_2BG0157210, gene-QOZ80_4AG0306670, gene-QOZ80_4BG0337670
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0186630.1, HORVU.MOREX.r3.6HG0568510.1 ... HORVU.MOREX.r3.3HG0229500.1.CDS1
Poaceae	Lolium multiflorum	4	gene-QYE76_021060, gene-QYE76_044640, gene-QYE76_045668 ... gene-QYE76_048562
Poaceae	Oryza coarctata	7	Oco01G001820, Oco02G001820, Oco03G004160, Oco04G004130 ... Oco07G013730, Oco08G013240, Oco18G008360
Poaceae	Oryza sativa	4	LOC_Os01g05120.1, LOC_Os02g08480.1, LOC_Os04g48770.2 ... LOC_Os09g32020.1
Poaceae	Paspalum vaginatum	3	gene-BS78_03G067300, gene-BS78_04G061400 ... gene-BS78_06G195000
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0202306, Pt_Chr0207590, Pt_Chr0302325, Pt_Chr0302374 ... Pt_Chr0307262, Pt_Chr0307310
Poaceae	Sporobolus alterniflorus	6	Chr02G023600, Chr05G001220, Chr06G033890, Chr15G025130 ... Chr16G002590, Chr17G002300
Poaceae	Thinopyrum elongatum	3	Tel2E01G694100, Tel3E01G122600, Tel6E01G305700
Poaceae	Triticum dicoccoides	5	gene_TRIDC2AG057530, gene_TRIDC2BG060320 ... gene_TRIDC3BG010610, gene_TRIDC6AG020150, gene_TRIDC6BG026100
Poaceae	Triticum aestivum	12	TraesCS2A02G397100.1, TraesCS2B02G415400.1 ... TraesCS2D02G394900.1, TraesCS3A02G065200.1.cds1, TraesCS3A02G065300.1.cds1, TraesCS3A02G065400.1.cds1, TraesCS3B02G078700.1.cds1, TraesCS3B02G078800.1.cds1, TraesCS3D02G065900.1.cds1, TraesCS6A02G146700.1, TraesCS6B02G174900.2, TraesCS6D02G136000.1
Poaceae	Zea mays	4	Zm00001eb037250_P001, Zm00001eb073360_P005 ... Zm00001eb124490_P001, Zm00001eb206740_P001
Poaceae	Zoysia japonica	1	nbis-gene-22625
Poaceae	Zoysia macrostachya	3	Zma_g12311, Zma_g15069, Zma_g20281
Portulacaceae	Portulaca oleracea	6	evm.TU.LG02.1418, evm.TU.LG02.2844, evm.TU.LG08.1441 ... evm.TU.LG09.547, evm.TU.LG15.1059, evm.TU.LG22.336
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g03530, gene.Posoc06g08330
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_12_RagTag.231, evm.TU.Scaffold_1_RagTag.2214 ... evm.TU.Scaffold_2_RagTag.152, evm.TU.Scaffold_5_RagTag.1063
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-24571, nbisL1-mrna-4070, nbisL1-mrna-5054
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-16518, nbisL1-mrna-4283, nbisL1-mrna-9955
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-19514, nbisL1-mrna-3336, nbisL1-mrna-9404
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000009l.204, evm.TU.utg000009l.1144 ... evm.TU.utg000016l.146, evm.TU.utg000027l.428
Rhizophoraceae	Kandelia obovata	4	Maker00005210, Maker00014122, Maker00016480, Maker00017845
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-14160, nbisL1-mrna-21783, nbisL1-mrna-5558
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-11739, nbisL1-mrna-14135, nbisL1-mrna-21097 ... nbisL1-mrna-5635
Salicaceae	Populus euphratica	4	populus_peu02104, populus_peu08802, populus_peu12325 ... populus_peu36560
Solanaceae	Lycium barbarum	2	gene-LOC132599237, gene-LOC132599238
Solanaceae	Solanum pennellii	1	gene-LOC107008334
Tamaricaceae	Reaumuria soongarica	1	gene_16859
Tamaricaceae	Tamarix chinensis	2	TC11G2086, TC12G0961
Zosteraceae	Zostera marina	1	Zosma04g25440.v3.1