Basic Information
Locus ID:
Ag8G02309
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
ASY1
Description:
synapsis
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 266426959 | 266432939 | - | Ag8G02309 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.76 | 29,932.28 Da | 43.91 | 79.42 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02301 | HORMA domain | 36 | 94 | 1.9E-11 | IPR003511 |
| Pfam | PF02301 | HORMA domain | 5 | 32 | 1.1E-4 | IPR003511 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 164 | 240 | 2.0E-8 | IPR036390 |
| SUPERFAMILY | SSF56019 | The spindle assembly checkpoint protein mad2 | 4 | 84 | 1.14E-17 | IPR036570 |
| Gene3D | G3DSA:1.10.10.10 | - | 148 | 253 | 1.1E-5 | IPR036388 |
| Gene3D | G3DSA:3.30.900.10 | HORMA domain | 1 | 111 | 1.0E-23 | IPR036570 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67370.1 | DNA-binding HORMA family protein. meiotic asynaptic mutant 1 (ASY1). ASY1 protein is initially distributed as numerous foci throughout the chromatin. During early G2, the foci are juxtaposed to the nascent chromosome axes to form a continuous axis associated signal. | 0 |
| RefSeq | XP_017221005.1 | PREDICTED: HORMA domain-containing protein 1 isoform X2 [Daucus carota subsp. sativus] | 0 |
| F4HRV8 | Meiosis-specific protein ASY1 OS=Arabidopsis thaliana OX=3702 GN=ASY1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7J0FPW8 | DNA-binding HORMA family protein OS=Actinidia rufa OX=165716 GN=Acr_13g0013770 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.659861 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.697197 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.390685 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.613283 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.935705 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.157845 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.981067 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.139157 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 11.779962 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 9.323165 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 11.522993 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 26.742414 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 13.000801 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 15.215324 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.208477 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.7359 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.189538 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.659441 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 2.604674 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 2.359123 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 2.365258 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 2.544839 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 1.674731 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.930457 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.782855 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.250461 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.471576 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.292963 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.089823 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.798804 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.300439 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.193194 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.99164 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 8.845315 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 4.991102 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.508132 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg34514, jg34515, jg9593, jg9594 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_18017, gene_18167 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah000780, Ah001193, Ah017137, Ah024861 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g150910 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg12012, Sbi_jg24049, Sbi_jg24050, Sbi_jg46940 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg12147, Seu_jg21231 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00002639, GOSA_00009569 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl35014, Sgl40407, Sgl80421, Sgl82882 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005862, gene:ENSEOMG00000025131 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30228600 |
| Apiaceae | Apium graveolens | 1 | Ag8G02309 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G009020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716145 |
| Asparagaceae | Asparagus officinalis | 8 | AsparagusV1_02.1386.V1.1, AsparagusV1_04.1459.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G03769 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G67370.1, AT4G32200.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018311m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g22320.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g044610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1026 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1072 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g03200 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0219s00008.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g24690, gene.Thate01g25600, gene.Thate08g06150 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.765 |
| Plantaginaceae | Plantago ovata | 8 | Pov_00002076, Pov_00011472, Pov_00012073, Pov_00013527 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34320 |
| Poaceae | Echinochloa crus-galli | 10 | AH03.2515, AH05.1522, BH02.1837, BH03.2206, BH03.2658 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1BG0083320, gene-QOZ80_3AG0217020 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0494140.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_023176 |
| Poaceae | Oryza coarctata | 2 | Oco14G006360, Oco18G008960 |
| Poaceae | Oryza sativa | 4 | LOC_Os01g07170.1, LOC_Os03g10570.1, LOC_Os09g20800.1 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G234400 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0701440, Pt_Chr0701491, Pt_Chr0702733 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr0G001020, Chr10G015140, Chr11G007140, Chr14G016700 |
| Poaceae | Thinopyrum elongatum | 3 | Tel3E01G306700, Tel5E01G457700, Tel5E01G751600 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5BG046830 |
| Poaceae | Triticum aestivum | 4 | TraesCS5A02G286500.1, TraesCS5A02G304300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb102420_P005, Zm00001eb247260_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-10362 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1325, evm.TU.LG12.376 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g03370 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_17_RagTag.120, evm.TU.Scaffold_8_RagTag.1603 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-23234, nbisL1-mrna-27054, nbisL1-mrna-27240 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11364, nbisL1-mrna-9335 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14635 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000001l.481, evm.TU.utg000013l.72 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006420 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-4981, nbisL1-mrna-6979 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13901 |
| Salicaceae | Populus euphratica | 2 | populus_peu04007, populus_peu34847 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641278 |
| Solanaceae | Solanum chilense | 1 | SOLCI006592900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017837 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3358 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0420 |
| Zosteraceae | Zostera marina | 1 | Zosma03g36440.v3.1 |