Basic Information
Locus ID:
Ag8G02301
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box only protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 266359321 | 266364369 | - | Ag8G02301 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 53,737.21 Da | 44.64 | 80.83 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 120 | 150 | 2.3E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 119 | 187 | 9.68E-10 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 159 | 448 | 1.19E-21 | IPR011043 |
| Gene3D | G3DSA:1.20.1280.50 | - | 120 | 156 | 2.7E-6 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 157 | 455 | 4.2E-17 | IPR015915 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 215 | 433 | 9.8E-11 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 117 | 162 | 8.861604 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27340.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_017223202.1 | PREDICTED: F-box only protein 6 [Daucus carota subsp. sativus] | 0 |
| Q9FZK1 | F-box only protein 6 OS=Arabidopsis thaliana OX=3702 GN=FBX6 PE=2 SV=1 | 0 | |
| TrEMBL | A0A175YT43 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026456 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 17.287312 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 15.099298 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 16.466106 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 17.085409 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 16.701202 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 19.264626 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 18.657909 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 18.436642 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 21.942099 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 19.544659 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 21.468639 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 31.376087 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 27.754381 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 23.337166 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 20.032236 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 18.362516 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 19.998547 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 11.064016 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 13.661675 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 18.703829 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 18.895226 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 17.971045 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 16.433159 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 22.094204 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 19.964474 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 12.515247 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 13.088462 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.693707 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 12.786516 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 10.356997 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 13.352295 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 12.156083 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 34.2953 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 27.294729 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 34.934074 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 22.739124 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 11.391171 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 18.258503 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 13.184065 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 14.893388 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 10.524644 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 43.034264 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 47.713535 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 28.539169 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 29.601723 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 39.239799 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 26.253757 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 18.107426 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 18.639055 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 16.209845 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg34507, jg9605 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3502 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah013932, Ah013944 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g150670 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42642, Sbi_jg45259 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26909 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002658 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl35474, Sgl40891 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003414, gene:ENSEOMG00000013195 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0002890, CQ.Regalona.r1.6BG0002780 |
| Apiaceae | Apium graveolens | 1 | Ag8G02301 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G009120, scaffold024819G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103715715, gene-LOC103719805 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.1469.V1.1, AsparagusV1_10.475.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri13G17458, Ftri8G16036, Ftri9G33008 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G27340.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007553m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g23570.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g032590.2N, BniB04g041720.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1012 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1059 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g12970 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.787 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019644 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34331 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0044850, gene-QOZ80_1BG0094860 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0311410.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_057458, gene-QYE76_057498 |
| Poaceae | Oryza coarctata | 2 | Oco01G028760, Oco02G029860 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g69940.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G385900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0503353, Pt_Chr0600560 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G002280, Chr03G023060, Chr05G032190, Chr08G019000 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G690100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG061570, gene_TRIDC3BG069280 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G435400.2, TraesCS3B02G470300.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb143020_P001, Zm00001eb364210_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-28305 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11834, Zma_g9287 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.1312, evm.TU.LG12.359, evm.TU.LG13.53 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g09090 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_15_RagTag.874, evm.TU.Scaffold_17_RagTag.109 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23248 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-11372, nbisL1-mrna-9344, nbisL1-mrna-9345 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14621, nbisL1-mrna-15532 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000001l.487, evm.TU.utg000013l.63 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00002381, Maker00006506 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11169, nbisL1-mrna-6970 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15999, nbisL1-mrna-17655 |
| Salicaceae | Populus euphratica | 2 | populus_peu03989, populus_peu34827 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641289 |
| Solanaceae | Solanum chilense | 1 | SOLCI006527500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007095 |
| Tamaricaceae | Reaumuria soongarica | 4 | STRG.5093_chr03_-, gene_11130, gene_11131, gene_3353 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0436 |