halophFGD

Basic Information

Locus ID: Ag8G02252

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Carbohydrate-binding protein of the ER

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	265864908	265871007	-	Ag8G02252

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.25	104,105.16 Da	48.08	91.51	-0.29

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00560	Leucine Rich Repeat	484	504	1.5	IPR001611
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	610	875	1.1E-49	IPR001245
Pfam	PF12819	Malectin-like domain	27	358	5.1E-89	IPR024788
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	594	875	1.89E-75	IPR011009
SUPERFAMILY	SSF52058	L domain-like	397	503	4.91E-23	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	571	683	9.7E-31	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	369	516	8.4E-29	IPR032675
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	684	900	6.4E-61	-
SMART	SM00220	serkin_6	608	882	4.6E-25	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	608	882	38.350502	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	729	741	-	IPR008271

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G67720.1	Leucine-rich repeat protein kinase family protein.
RefSeq	XP_017223347.1	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Daucus carota subsp. sativus]
Swiss-Prot	C0LGI2	Probable LRR receptor-like serine/threonine-protein kinase At1g67720 OS=Arabidopsis thaliana OX=3702 GN=At1g67720 PE=1 SV=1
TrEMBL	A0A175YR27	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026489 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	6.221684	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	6.729633	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	4.962018	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	4.09239	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	4.609763	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.781258	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	3.690991	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	2.351885	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	14.510623	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	12.921582	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	13.402435	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	9.88067	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	9.592724	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	9.110166	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	1.639893	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	3.587568	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	16.184572	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	5.59624	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	6.843312	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	10.045242	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	9.883351	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	50.496964	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	50.408314	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	53.695366	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	49.882339	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	18.189575	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	11.217793	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	24.49877	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	17.248085	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.749645		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	2.108728		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	1.314017		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	1.94697		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	8.903238		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	1.741503		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	1.182219		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.256338		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.418324		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	5.091617	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	4.090465	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	4.385696	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	2.803137	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	2.694418	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	9.279861	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	14.565681	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	2.902292	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	13.761959	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	21.636263	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	42.056553	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	37.766819	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg14926, jg14927, jg3438, jg34561, jg9544
Aizoaceae	Mesembryanthemum crystallinum	2	gene_14190, gene_18050
Amaranthaceae	Atriplex hortensis	2	Ah013817, Ah030209
Amaranthaceae	Beta vulgaris	1	BVRB_6g147660
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg27599, Sbi_jg32919, Sbi_jg42752, Sbi_jg42753 ... Sbi_jg42754, Sbi_jg45377
Amaranthaceae	Salicornia europaea	2	Seu_jg11238, Seu_jg7703
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00002557, GOSA_00012142
Amaranthaceae	Suaeda glauca	4	Sgl35118, Sgl40497, Sgl71563, Sgl75139
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000003146, gene:ENSEOMG00000006876 ... gene:ENSEOMG00000013305, gene:ENSEOMG00000027311, gene:ENSEOMG00000036259, gene:ENSEOMG00000041434
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.6AG0003710, CQ.Regalona.r1.6BG0003730 ... CQ.Regalona.r1.7AG0016840, CQ.Regalona.r1.7BG0016570, CQ.Regalona.r1.7BG0019140
Anacardiaceae	Pistacia vera	2	pistato.v30227840, pistato.v30271900
Apiaceae	Apium graveolens	2	Ag10G01923, Ag8G02252
Arecaceae	Cocos nucifera	3	COCNU_04G002830, COCNU_04G014550, scaffold011903G000020
Arecaceae	Phoenix dactylifera	3	gene-LOC103702853, gene-LOC103708996, gene-LOC103711613
Asparagaceae	Asparagus officinalis	2	AsparagusV1_02.225.V1.1, AsparagusV1_09.204.V1.1
Asteraceae	Flaveria trinervia	3	Ftri12G17450, Ftri13G27942, Ftri17G31209
Brassicaceae	Arabidopsis thaliana	2	AT1G67720.1, AT2G37050.3
Brassicaceae	Eutrema salsugineum	2	Thhalv10016198m.g.v1.0, Thhalv10018088m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp4g19360.v2.2, Sp5g22730.v2.2
Brassicaceae	Brassica nigra	3	BniB03g044970.2N, BniB06g007390.2N, BniB08g023470.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq07G1300, Ceq08G1277
Casuarinaceae	Casuarina glauca	2	Cgl07G1373, Cgl08G1305
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno05g15830
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate06g01840
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.1376, evm.TU.LG03.690
Plantaginaceae	Plantago ovata	2	Pov_00003248, Pov_00003307
Plumbaginaceae	Limonium bicolor	1	Lb6G30675
Poaceae	Echinochloa crus-galli	6	AH02.4671, AH04.15, AH05.92, BH02.4739, BH04.23, CH04.21
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0048410, gene-QOZ80_1BG0098350 ... gene-QOZ80_9AG0671790, gene-QOZ80_9BG0695340
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.3HG0330950.1, HORVU.MOREX.r3.5HG0466820.1 ... HORVU.MOREX.r3.5HG0474560.1
Poaceae	Lolium multiflorum	5	gene-QYE76_000204, gene-QYE76_003817, gene-QYE76_007989 ... gene-QYE76_030786, gene-QYE76_058498
Poaceae	Oryza coarctata	10	Oco01G031390, Oco02G032500, Oco04G023990 ... Ocoptg000043lG000010, Ocoptg000061lG000110, Ocoptg000074lG000020, Ocoptg000081lG000060, Ocoptg000092lG000060, Ocoptg000275lG000030, Ocoptg000441lG000020
Poaceae	Oryza sativa	2	LOC_Os11g01200.1, LOC_Os12g01200.2
Poaceae	Paspalum vaginatum	2	gene-BS78_03G420800, gene-BS78_05G001700
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0102993, Pt_Chr0601055, Pt_Chr0705183
Poaceae	Sporobolus alterniflorus	8	Chr03G023980, Chr04G020660, Chr07G022530, Chr08G017460 ... Chr19G011170, Chr21G008730, Chr27G004930, Chr31G000080
Poaceae	Thinopyrum elongatum	3	Tel3E01G730200, Tel3E01G914300, Tel5E01G270100
Poaceae	Triticum dicoccoides	4	gene_TRIDC3AG076020, gene_TRIDC3BG087740 ... gene_TRIDC5AG025980, gene_TRIDC5BG027130
Poaceae	Triticum aestivum	6	TraesCS3A02G538300.1, TraesCS3B02G603800.1 ... TraesCS3D02G543900.2, TraesCS5A02G156400.2, TraesCS5B02G154600.2, TraesCS5D02G161800.1
Poaceae	Zea mays	2	Zm00001eb139660_P001, Zm00001eb194930_P001
Poaceae	Zoysia japonica	1	nbis-gene-28044
Poaceae	Zoysia macrostachya	2	Zma_g12028, Zma_g18310
Portulacaceae	Portulaca oleracea	3	evm.TU.LG13.109, evm.TU.LG16.1034, evm.TU.LG20.1448
Posidoniaceae	Posidonia oceanica	1	gene.Posoc01g35900
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.60444.13, evm.TU.Scaffold_15_RagTag.825 ... evm.TU.Scaffold_17_RagTag.13, evm.TU.Scaffold_1_RagTag.1596
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-23180, nbisL1-mrna-27013, nbisL1-mrna-27200 ... nbisL1-mrna-5300, nbisL1-mrna-5399
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-17451, nbisL1-mrna-19218, nbisL1-mrna-9292
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-14688, nbisL1-mrna-15577, nbisL1-mrna-3874
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000001l.453, evm.TU.utg000013l.109 ... evm.TU.utg000016l.570
Rhizophoraceae	Kandelia obovata	3	Maker00002580, Maker00006407, Maker00016558
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-11206, nbisL1-mrna-5087, nbisL1-mrna-7019
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-15939, nbisL1-mrna-17696, nbisL1-mrna-489
Salicaceae	Populus euphratica	5	populus_peu07667, populus_peu11741, populus_peu11749 ... populus_peu21713, populus_peu25799
Solanaceae	Lycium barbarum	2	gene-LOC132630109, gene-LOC132641213
Solanaceae	Solanum chilense	2	SOLCI005605700, SOLCI006905700
Solanaceae	Solanum pennellii	2	gene-LOC107020726, gene-LOC107031477
Tamaricaceae	Reaumuria soongarica	2	gene_2732, gene_6772
Tamaricaceae	Tamarix chinensis	3	TC02G1849, TC07G0633, TC11G0383
Zosteraceae	Zostera marina	2	Zosma01g18710.v3.1, Zosma01g18720.v3.1