Basic Information
Locus ID:
Ag8G02235
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 265740336 | 265742992 | - | Ag8G02235 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.13 | 39,576.86 Da | 61.10 | 84.37 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 118 | 246 | 5.3E-33 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 22 | 225 | 3.87E-9 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 117 | 355 | 24.095352 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 355 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67900.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_017220077.1 | PREDICTED: BTB/POZ domain-containing protein At1g67900 [Daucus carota subsp. sativus] | 0 |
| Q9C9V6 | BTB/POZ domain-containing protein At1g67900 OS=Arabidopsis thaliana OX=3702 GN=At1g67900 PE=1 SV=1 | 0 | |
| TrEMBL | A0A175YSE1 | NPH3 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026510 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 9.490558 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 14.591179 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 9.353205 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 10.023261 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 9.798367 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.432172 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.63186 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.220013 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 24.081856 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 23.4573 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 29.476677 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 23.347666 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 23.180172 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 19.474897 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 4.174172 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.996447 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 6.252824 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.81091 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.427052 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 10.115888 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 12.064276 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 14.204926 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 14.213268 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 9.862847 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 12.46286 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 11.178536 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 7.431284 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 9.933637 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 10.561299 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.43923 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.921353 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.151975 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 8.57984 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 11.807697 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.5509 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 6.75823 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.854728 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 4.098024 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 25.318989 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 13.661919 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 10.292288 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.917806 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 9.373179 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 28.629604 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 46.839893 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.896337 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 31.725943 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 17.235941 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 19.613066 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 18.292635 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg34596, jg5525, jg7011, jg9513 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18105 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah013680 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g148440 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42837, Sbi_jg45462 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11314 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002491 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl35224, Sgl40610 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000002919, gene:ENSEOMG00000013525 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0004560, CQ.Regalona.r1.6BG0004640 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30220150 |
| Apiaceae | Apium graveolens | 5 | Ag1G01273, Ag5G02245, Ag6G00301, Ag7G00953, Ag8G02235 |
| Arecaceae | Cocos nucifera | 1 | scaffold026573G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103698176 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.1628.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri13G15790, Ftri3G29162, Ftri5G21690 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G67900.1, AT3G26490.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10003883m.g.v1.0, Thhalv10019709m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g15600.v2.2, Sp5g22910.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g066810.2N, BniB03g042350.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1346 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1425 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g12530 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g00600 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11082, nbisL1-mrna-11083 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.616 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00022313 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G37487, Lb1G00847, Lb6G30069 |
| Poaceae | Echinochloa crus-galli | 8 | AH01.4049, AH07.2445, BH07.2254, BH09.1479, CH03.721 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0136050, gene-QOZ80_2BG0191590 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0590910.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_023412 |
| Poaceae | Oryza coarctata | 4 | Oco03G014250, Oco04G014580, Oco07G008560, Oco08G008470 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g38120.1, LOC_Os04g40100.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G181200, gene-BS78_04G182300 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0204437 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G008560, Chr09G012740, Chr13G008620, Chr23G010590 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G410000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG032350, gene_TRIDC6BG038710 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G208800.2, TraesCS6B02G237800.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb079670_P001, Zm00001eb183690_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-18651, nbis-gene-29765, nbis-gene-7407 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g13805, Zma_g16600, Zma_g21459 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.459, evm.TU.LG12.1252, evm.TU.LG13.156 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g02710 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_15_RagTag.789, evm.TU.Scaffold_17_RagTag.191 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-23147, nbisL1-mrna-26973, nbisL1-mrna-27163 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12675, nbisL1-mrna-6717 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15611 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000001l.427, evm.TU.utg000013l.133 |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00002364, Maker00002574, Maker00006522 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11233, nbisL1-mrna-7043 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15903, nbisL1-mrna-17728 |
| Salicaceae | Populus euphratica | 2 | populus_peu07709, populus_peu21761 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132614938, gene-LOC132641146 |
| Solanaceae | Solanum chilense | 1 | SOLCI007256600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020643 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.22566_chr10_-, STRG.9116_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0858 |